v2.0.1

Fixes for updates from py2 to py3 and due to the increment in pysam version to 0.20.0.

• pysam changed the API term: cigar to cigartuples. Calls were updated to account for this change.
• Mapping of contig names to header positions was off, and required correction.
• g2g.get_logger was used in several places when g2g_utils.get_logger was intended.

v2.0.0

Latest version used in Workflows

1.0.1 New setup and versioning

Same functionality as 1.0.0

1.0.0 Move to Python 3.x

This release is geared toward migrating the existing codebase to Python 3.

v0.1.31

Stable version

v0.1.19

Merge branch 'release/v0.1.19'

v0.1.13

Fixed bug where variable not declared before branch

v.0.1.12

Fixed an incorrect logic branch in bamsam conversion

v0.1.10

Simple gtf2db

v0.1.9

simple chain fix