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chore(release): Release 0.9.4
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@nokara26
nokara26 committed Dec 25, 2023
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -17,13 +17,13 @@ Variant translation library for Clojure.
Clojure CLI/deps.edn:

```clojure
varity/varity {:mvn/version "0.9.3"}
varity/varity {:mvn/version "0.9.4"}
```

Leiningen/Boot:

```clojure
[varity "0.9.3"]
[varity "0.9.4"]
```

To use varity with Clojure 1.8, you must include a dependency on
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2 changes: 1 addition & 1 deletion docs/index.html
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@@ -1,6 +1,6 @@
<!DOCTYPE html PUBLIC ""
"">
<html><head><meta charset="UTF-8" /><title>varity 0.9.3</title><link rel="stylesheet" type="text/css" href="css/default.css" /><link rel="stylesheet" type="text/css" href="highlight/solarized-light.css" /><script type="text/javascript" src="highlight/highlight.min.js"></script><script type="text/javascript" src="js/jquery.min.js"></script><script type="text/javascript" src="js/page_effects.js"></script><script>hljs.initHighlightingOnLoad();</script></head><body><div id="header"><h2>Generated by <a href="https://github.com/weavejester/codox">Codox</a> with <a href="https://github.com/xsc/codox-theme-rdash">RDash UI</a> theme</h2><h1><a href="index.html"><span class="project-title"><span class="project-name">varity</span> <span class="project-version">0.9.3</span></span></a></h1></div><div class="sidebar primary"><h3 class="no-link"><span class="inner">Project</span></h3><ul class="index-link"><li class="depth-1 current"><a href="index.html"><div class="inner">Index</div></a></li></ul><h3 class="no-link"><span class="inner">Namespaces</span></h3><ul><li class="depth-1"><div class="no-link"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>varity</span></div></div></li><li class="depth-2 branch"><a href="varity.chain.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>chain</span></div></a></li><li class="depth-2 branch"><a href="varity.codon.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>codon</span></div></a></li><li class="depth-2 branch"><a href="varity.fusion.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>fusion</span></div></a></li><li class="depth-2 branch"><a href="varity.hgvs.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>hgvs</span></div></a></li><li class="depth-2 branch"><a href="varity.hgvs-to-vcf.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>hgvs-to-vcf</span></div></a></li><li class="depth-2 branch"><a href="varity.lift.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>lift</span></div></a></li><li class="depth-2 branch"><a href="varity.ref-gene.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>ref-gene</span></div></a></li><li class="depth-2 branch"><a href="varity.util.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>util</span></div></a></li><li class="depth-2 branch"><a href="varity.vcf-lift.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>vcf-lift</span></div></a></li><li class="depth-2"><a href="varity.vcf-to-hgvs.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>vcf-to-hgvs</span></div></a></li></ul></div><div class="namespace-index" id="content"><h1><span class="project-title"><span class="project-name">varity</span> <span class="project-version">0.9.3</span></span></h1><h5 class="license">Released under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License, Version 2.0</a></h5><div class="doc"><p>Variant translation library for Clojure.</p></div><h2>Installation</h2><p>To install, add the following dependency to your project or build file:</p><pre class="deps">[varity "0.9.3"]</pre><h2>Namespaces</h2><div class="namespace"><h3><a href="varity.chain.html">varity.chain</a></h3><div class="doc"><pre class="plaintext">Functions to read, index, and search the chain format. See
<html><head><meta charset="UTF-8" /><title>varity 0.9.4</title><link rel="stylesheet" type="text/css" href="css/default.css" /><link rel="stylesheet" type="text/css" href="highlight/solarized-light.css" /><script type="text/javascript" src="highlight/highlight.min.js"></script><script type="text/javascript" src="js/jquery.min.js"></script><script type="text/javascript" src="js/page_effects.js"></script><script>hljs.initHighlightingOnLoad();</script></head><body><div id="header"><h2>Generated by <a href="https://github.com/weavejester/codox">Codox</a> with <a href="https://github.com/xsc/codox-theme-rdash">RDash UI</a> theme</h2><h1><a href="index.html"><span class="project-title"><span class="project-name">varity</span> <span class="project-version">0.9.4</span></span></a></h1></div><div class="sidebar primary"><h3 class="no-link"><span class="inner">Project</span></h3><ul class="index-link"><li class="depth-1 current"><a href="index.html"><div class="inner">Index</div></a></li></ul><h3 class="no-link"><span class="inner">Namespaces</span></h3><ul><li class="depth-1"><div class="no-link"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>varity</span></div></div></li><li class="depth-2 branch"><a href="varity.chain.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>chain</span></div></a></li><li class="depth-2 branch"><a href="varity.codon.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>codon</span></div></a></li><li class="depth-2 branch"><a href="varity.fusion.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>fusion</span></div></a></li><li class="depth-2 branch"><a href="varity.hgvs.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>hgvs</span></div></a></li><li class="depth-2 branch"><a href="varity.hgvs-to-vcf.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>hgvs-to-vcf</span></div></a></li><li class="depth-2 branch"><a href="varity.lift.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>lift</span></div></a></li><li class="depth-2 branch"><a href="varity.ref-gene.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>ref-gene</span></div></a></li><li class="depth-2 branch"><a href="varity.util.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>util</span></div></a></li><li class="depth-2 branch"><a href="varity.vcf-lift.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>vcf-lift</span></div></a></li><li class="depth-2"><a href="varity.vcf-to-hgvs.html"><div class="inner"><span class="tree"><span class="top"></span><span class="bottom"></span></span><span>vcf-to-hgvs</span></div></a></li></ul></div><div class="namespace-index" id="content"><h1><span class="project-title"><span class="project-name">varity</span> <span class="project-version">0.9.4</span></span></h1><h5 class="license">Released under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License, Version 2.0</a></h5><div class="doc"><p>Variant translation library for Clojure.</p></div><h2>Installation</h2><p>To install, add the following dependency to your project or build file:</p><pre class="deps">[varity "0.9.4"]</pre><h2>Namespaces</h2><div class="namespace"><h3><a href="varity.chain.html">varity.chain</a></h3><div class="doc"><pre class="plaintext">Functions to read, index, and search the chain format. See
<a href="https://genome.ucsc.edu/goldenPath/help/chain.html">https://genome.ucsc.edu/goldenPath/help/chain.html</a> for the detail chain format
specifications.</pre></div><div class="index"><p>Public variables and functions:</p><ul><li> <a href="varity.chain.html#var-index">index</a> </li><li> <a href="varity.chain.html#var-load-chain">load-chain</a> </li><li> <a href="varity.chain.html#var-search-chains">search-chains</a> </li><li> <a href="varity.chain.html#var-search-containing-chains">search-containing-chains</a> </li><li> <a href="varity.chain.html#var-search-overlap-blocks">search-overlap-blocks</a> </li></ul></div></div><div class="namespace"><h3><a href="varity.codon.html">varity.codon</a></h3><div class="doc"><pre class="plaintext">Handles codon.</pre></div><div class="index"><p>Public variables and functions:</p><ul><li> <a href="varity.codon.html#var-amino-acid-.3Ecodons">amino-acid-&gt;codons</a> </li><li> <a href="varity.codon.html#var-amino-acid-sequence">amino-acid-sequence</a> </li><li> <a href="varity.codon.html#var-codon-.3Eamino-acid">codon-&gt;amino-acid</a> </li></ul></div></div><div class="namespace"><h3><a href="varity.fusion.html">varity.fusion</a></h3><div class="doc"><pre class="plaintext">NOTE: This algorithm was initially developed at Cancer Precision
Medicine Center, Japanese Foundation for Cancer Research and Xcoo
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