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28 Open 15 Closed
28 Open 15 Closed
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Issues list

Renaming of <Protons/> ffxml block for consistency.
#127 opened May 1, 2018 by bas-rustenburg
3 tasks
Abl benchmarks
#117 opened Feb 6, 2018 by bas-rustenburg
1
Handle syn- and anti- protons for carboxylic acids in ligands enhancement
#111 opened Aug 28, 2017 by jchodera
Calibration plotting tweaks visualization
#110 opened Aug 18, 2017 by bas-rustenburg
Could protons be used for membrane proteins?
#108 opened Jul 29, 2017 by yongwangCPH
2
Decide on rest of figures for paper visualization
#107 opened Jul 26, 2017 by jchodera 1st paper
1
Decide on simulation settings:
#106 opened Jul 24, 2017 by bas-rustenburg
3 tasks
Clean the data repo
#105 opened Jul 24, 2017 by bas-rustenburg
Update the documentation. documentation
#103 opened Jul 24, 2017 by bas-rustenburg
1
Add adjust-to-pH feature new feature
#102 opened Jul 24, 2017 by bas-rustenburg
Automated plotting module new feature visualization
#101 opened Jul 24, 2017 by bas-rustenburg
2 of 3 tasks
1st paper
Create a module for BAR analysis of calibration data analysis new feature
#100 opened Jul 24, 2017 by bas-rustenburg 1st paper
@bas-rustenburg
Don't need to pass ffxml file to constructor
#95 opened Jun 20, 2017 by jchodera
Ideas for increasing acceptance rates
#94 opened Jun 20, 2017 by jchodera
Use getter functions of ExternalPerturbation integrators
#84 opened May 16, 2017 by bas-rustenburg
Fix broken remove_temp_files argument
#82 opened May 12, 2017 by bas-rustenburg
Good ways to handle atom types between protonation states
#79 opened May 8, 2017 by bas-rustenburg
Speed up driver __init__ by caching exceptions.
#77 opened May 1, 2017 by bas-rustenburg
1
Streamlining protein:ligand constant-pH simulation
#75 opened Apr 23, 2017 by jchodera
@bas-rustenburg
3
Support for modified version of forces in alchemy
#71 opened Feb 13, 2017 by bas-rustenburg
1
Units of g_k in the code
#66 opened Dec 9, 2016 by bas-rustenburg
1
Add documentation for setting up a system using tleap enhancement
#54 opened Aug 31, 2016 by bas-rustenburg
Debug simulation crashes
#45 opened Jun 2, 2016 by bas-rustenburg
@bas-rustenburg
6
Todo list
#20 opened Mar 14, 2016 by bas-rustenburg
30 of 42 tasks
1
Brainstorm simulation API proposal
#19 opened Feb 28, 2016 by bas-rustenburg
39
ProTip! Updated in the last three days: updated:>2024-12-13.