Interactive Visualization with R

ukb dataset is the example dataset.

IBD Segments Plot

king -b ukb.bed --ibdseg --prefix ukb

Output files: ukb.seg,ukb.segments.gz,ukballsegs.txt

Run IBDseg.R in the same directory.

Reference: http://people.virginia.edu/~wc9c/KING/manual.html#IBDSEG

ROH segments plot

king -b ukb.bed --roh --prefix ukb

Output files: ukballsegs.txt,ukb.roh,ukb.rohseg.gz

Run ROH.R in the same directory.

Reference: http://people.virginia.edu/~wc9c/KING/KINGvisualization.html