Fix build test #469
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: tests | |
| on: | |
| push: | |
| branches: | |
| - "*" | |
| pull_request: | |
| branches: | |
| - master | |
| workflow_dispatch: | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| concurrency: | |
| group: "${{ github.ref }}-${{ github.head_ref }}" | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| name: Build package and test build | |
| uses: ./.github/workflows/_build-package.yml | |
| with: | |
| check-prerelease: ${{ github.event_name == 'workflow_dispatch' }} | |
| cache-package: true | |
| upload-package: true | |
| test-files: true | |
| test-imports: true | |
| unit-tests: | |
| name: ${{ matrix.label }} | |
| runs-on: ${{ matrix.os }} | |
| # only run once if internal PR | |
| if: github.event_name == 'push' || github.event.pull_request.head.repo.full_name != github.repository | |
| strategy: | |
| matrix: | |
| include: | |
| - label: earliest | |
| os: ubuntu-latest | |
| python-version: 3.8 | |
| rdkit-version: "rdkit=2021.03.1" | |
| coverage: false | |
| - label: baseline | |
| os: ubuntu-latest | |
| python-version: "3.10" | |
| rdkit-version: "rdkit~=2022.09" | |
| coverage: true | |
| - label: latest | |
| os: ubuntu-latest | |
| python-version: "3.12" | |
| rdkit-version: "rdkit" | |
| coverage: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| auto-update-conda: true | |
| channel-priority: flexible | |
| channels: conda-forge, defaults | |
| add-pip-as-python-dependency: true | |
| architecture: x64 | |
| use-mamba: true | |
| miniforge-variant: Mambaforge | |
| - name: Check conda and pip | |
| run: | | |
| which python | |
| python --version | |
| pip --version | |
| conda --version | |
| mamba --version | |
| - name: Install conda dependencies | |
| run: | | |
| mamba install ${{ matrix.rdkit-version }} | |
| mamba list | |
| - name: Install package through pip | |
| run: | | |
| pip install .[dev] | |
| pip list | |
| - name: Run tests | |
| run: | | |
| pytest --color=yes --disable-pytest-warnings --cov=prolif --cov-report=xml tests/ | |
| - name: Measure tests coverage | |
| if: matrix.coverage | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ./coverage.xml | |
| fail_ci_if_error: true | |
| verbose: true | |
| token: ${{ secrets.CODECOV_TOKEN }} |