Unblacklist trinotate recipe (bioconda#10206)

* unblacklist trinotate * this module needs to be rebuilt * fix broken recipe * fix find command * rebuild * permission problem * Update build.sh
chapmanb · Aug 3, 2018 · 6b6bcc0 · 6b6bcc0
1 parent f674132
commit 6b6bcc0
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Showing 3 changed files with 4 additions and 5 deletions.
diff --git a/build-fail-blacklist b/build-fail-blacklist
@@ -1547,9 +1547,6 @@ recipes/kat/2.3.1
 # oh no TPP is failing, it was a nightmare to get it to compile in the first place :(
 recipes/tpp
 
-# missing perl module
-recipes/trinotate
-
 # compilation error
 recipes/hts-nim-tools
 

diff --git a/recipes/trinotate/build.sh b/recipes/trinotate/build.sh
@@ -8,7 +8,7 @@ mv util/auto_Trinotate.txt util/auto_Trinotate.sh
 cp -rf PerlLib perl-build/lib
 cp -rf sample_data ${PREFIX}/trinotate-sample-data
 
-find -name "*.pl" | grep -v sample_data | xargs -I {} cp -rf {} perl-build/scripts/
+find . -name "*.pl" | grep -v sample_data | xargs -I {} cp -rf {} perl-build/scripts/
 cp Trinotate perl-build/scripts
 
 cd perl-build
@@ -18,3 +18,5 @@ cp ${RECIPE_DIR}/Build.PL ./
 perl ./Build.PL
 perl ./Build manifest
 perl ./Build install --installdirs site
+
+chmod u+rwx $PREFIX/bin/*
diff --git a/recipes/trinotate/meta.yaml b/recipes/trinotate/meta.yaml
@@ -6,7 +6,7 @@ about:
     transcriptomes, from model or non-model organisms'
 
 build:
-  number: 3
+  number: 4
 
 package:
   name: trinotate