feat: update ontology_info.json for 5.1

[Bento007]

Reason for Change

• ontology guide must download and process pinned ontologies #80

[nayib-jose-gloria]

looks like the new EFO release has an unexpected type for "synonym". we'll have to investigate if its an issue with our builder, the release, owlready, or if its valid somehow

[Bento007]

  "EFO:0022503": {
    "ancestors": {
      "EFO:0002888": 1,
      "EFO:0001639": 2,
      "EFO:0000001": 6
    },
    "label": "92-1",
    "description": "Human uveal melanoma",
    "synonyms": [
      92.1
    ],
    "deprecated": false
  }

It looks like something that could easily be a typo. 92.1 could be converted to a string and then it will work fine.

[brianraymor]

Not commenting on the typing, but it looks like EFO is adding cell lines?

Human uveal melanoma

[brianraymor]

Typed as decimal?

<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#decimal">92.1</oboInOwl:hasExactSynonym>

[Bento007]

It's being parsed into a float in python

[nayib-jose-gloria]

  "EFO:0022503": {
    "ancestors": {
      "EFO:0002888": 1,
      "EFO:0001639": 2,
      "EFO:0000001": 6
    },
    "label": "92-1",
    "description": "Human uveal melanoma",
    "synonyms": [
      92.1
    ],
    "deprecated": false
  }

It looks like something that could easily be a typo. 92.1 could be converted to a string and then it work work fine.

I think its probably safe to add a str cast in the builder for anything in synonym, label, description

[nayib-jose-gloria]

nit: any reason not to just [str(x) for x in hasExactSynonym]?

[codecov]

Codecov Report

Attention: Patch coverage is 0% with 2 lines in your changes are missing coverage. Please review.

Project coverage is 85.26%. Comparing base (1ba810e) to head (6c11b71).

❗ Current head 6c11b71 differs from pull request most recent head f11690e. Consider uploading reports for the commit f11690e to get more accurate results

Files	Patch %	Lines
...ols/ontology-builder/src/all_ontology_generator.py	0.00%	2 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #207   +/-   ##
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  Coverage   85.26%   85.26%           
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  Files          18       18           
  Lines        1106     1106           
  Branches      214      215    +1     
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  Hits          943      943           
  Misses        153      153           
  Partials       10       10           

Flag	Coverage Δ
unittests	85.26% <0.00%> (ø)

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