fix tests

chanzuckerberg · May 14, 2024 · 6c11b71 · 6c11b71
1 parent 3c3f5ab
commit 6c11b71
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/api/python/src/cellxgene_ontology_guide/ontology_parser.py b/api/python/src/cellxgene_ontology_guide/ontology_parser.py
@@ -520,7 +520,7 @@ def map_term_labels(self, term_ids: Iterable[str]) -> Dict[str, str]:
         >>> from cellxgene_ontology_guide.ontology_parser import OntologyParser
         >>> ontology_parser = OntologyParser()
         >>> ontology_parser.map_term_labels(["CL:0000005", "CL:0000003"])
-        {'CL:0000005': 'fibroblast neural crest derived', 'CL:0000003': 'obsolete native cell'}
+        {'CL:0000005': 'neural crest derived fibroblast', 'CL:0000003': 'obsolete native cell'}
 
         :param term_ids: list of str ontology terms to fetch label for
         :return: Dict[str, str] mapping term IDs to their respective human-readable labels

diff --git a/tools/ontology-builder/src/all_ontology_generator.py b/tools/ontology-builder/src/all_ontology_generator.py
@@ -196,7 +196,7 @@ def _extract_ontology_term_metadata(onto: owlready2.entity.ThingClass) -> Dict[s
             term_dict[term_id]["description"] = onto_term.IAO_0000115[0]
         # optional synonym list, if available
         if hasExactSynonym := getattr(onto_term, "hasExactSynonym", None):
-            term_dict[term_id]["synonyms"] = [x if isinstance(x, str) else str(x) for x in hasExactSynonym]
+            term_dict[term_id]["synonyms"] = [str(x) for x in hasExactSynonym]
         # Add the "deprecated" status and associated metadata if True
         term_dict[term_id]["deprecated"] = False
         if onto_term.deprecated and onto_term.deprecated.first():