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We were overwriting all the file timestamps with a configurable SOURCE_DATE_EPOCH, which was always the unix epoch. The only reason we were doing this is that we were also setting the modtime of everything to time.Now() elsewhere.
That's silly.
Instead, don't set anything to time.Now() and keep file modtimes when we add them to the filesystem. If the APKs change, nothing will be reproducible anyway, so keeping the data from the APK seems way better.