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.gitattributes
.gitattributes
 
 
.gitignore
.gitignore
 
 
README.md
README.md
 
 
Sample_Description file.txt
Sample_Description file.txt
 
 
acronym_extract_github_code.py
acronym_extract_github_code.py
 
 
assign cl to rules auto.py
assign cl to rules auto.py
 
 
automatic filtering using gmk.py
automatic filtering using gmk.py
 
 
bnf.txt
bnf.txt
 
 
code for finding matches in qfilter.py
code for finding matches in qfilter.py
 
 
code for getting imp info from series files.py
code for getting imp info from series files.py
 
 
code for removing english words from gene symbols.py
code for removing english words from gene symbols.py
 
 
coding notes.txt
coding notes.txt
 
 
convert id to gene.py
convert id to gene.py
 
 
creating mouse synonyms list.py
creating mouse synonyms list.py
 
 
df for new rules.py
df for new rules.py
 
 
df.py
df.py
 
 
df1.py
df1.py
 
 
divide mouse GS into 2 parts.py
divide mouse GS into 2 parts.py
 
 
english removal for leading white space removed mouse gene.py
english removal for leading white space removed mouse gene.py
 
 
extract ff from acro.py
extract ff from acro.py
 
 
extract gene symbols.py
extract gene symbols.py
 
 
extract genes only.py
extract genes only.py
 
 
extract gs from 14k file with occurences.py
extract gs from 14k file with occurences.py
 
 
extract imp info from selected files.py
extract imp info from selected files.py
 
 
extract imp infor from not done files which are creed verified.py
extract imp infor from not done files which are creed verified.py
 
 
extract unique files from all files found in 14k.py
extract unique files from all files found in 14k.py
 
 
fgm.py
fgm.py
 
 
fgm.pyc
fgm.pyc
 
 
file names in deficient one matches.py
file names in deficient one matches.py
 
 
filter mouse.py
filter mouse.py
 
 
find files with no microarray data.py
find files with no microarray data.py
 
 
find files with no microarray data1.py
find files with no microarray data1.py
 
 
find occurence of each filter element in qfilter.py
find occurence of each filter element in qfilter.py
 
 
find sf_lf.py
find sf_lf.py
 
 
find unique filter matches.py
find unique filter matches.py
 
 
find unique mouse symbols.py
find unique mouse symbols.py
 
 
find unique organisms.py
find unique organisms.py
 
 
find_match.py
find_match.py
 
 
find_match.pyc
find_match.pyc
 
 
finding gmk_gs vicinity instances to get more rules_all.py
finding gmk_gs vicinity instances to get more rules_all.py
 
 
finding gmk_gs vicinity instances to get more rules_large.py
finding gmk_gs vicinity instances to get more rules_large.py
 
 
finding gmk_gs vicinity instances to get more rules_small.py
finding gmk_gs vicinity instances to get more rules_small.py
 
 
finding more gmk_down instances.py
finding more gmk_down instances.py
 
 
finding more gmk_up instances.py
finding more gmk_up instances.py
 
 
finding occurences of rules.py
finding occurences of rules.py
 
 
finding occurences of rules_del_null.py
finding occurences of rules_del_null.py
 
 
fold change.py
fold change.py
 
 
get vicinity based results for 14k files.py
get vicinity based results for 14k files.py
 
 
gs matches for 14k files with occurence.txt
gs matches for 14k files with occurence.txt
 
 
h_fgm.py
h_fgm.py
 
 
h_fgm1.py
h_fgm1.py
 
 
hrr to mrr.py
hrr to mrr.py
 
 
keywords.txt
keywords.txt
 
 
keywords1.txt
keywords1.txt
 
 
more non gene words.txt
more non gene words.txt
 
 
mtech_fgm.py
mtech_fgm.py
 
 
mtech_fgm_for cl assignment to rules using creeds.py
mtech_fgm_for cl assignment to rules using creeds.py
 
 
mtech_fgm_for test.py
mtech_fgm_for test.py
 
 
mtech_newer_rules.py
mtech_newer_rules.py
 
 
mtech_newer_rules.pyc
mtech_newer_rules.pyc
 
 
mtech_newer_rules_for_testing_purposes_only.py
mtech_newer_rules_for_testing_purposes_only.py
 
 
mus musculus_gene_symbols1.txt
mus musculus_gene_symbols1.txt
 
 
new_rules.py
new_rules.py
 
 
new_rules.pyc
new_rules.pyc
 
 
newer_rules.pyc
newer_rules.pyc
 
 
organisms in the series files.py
organisms in the series files.py
 
 
organisms with their occurence numbers.xlsx
organisms with their occurence numbers.xlsx
 
 
organisms.txt
organisms.txt
 
 
output_file.txt
output_file.txt
 
 
output_file2.txt
output_file2.txt
 
 
parsing rules.py
parsing rules.py
 
 
parsing rules_2.py
parsing rules_2.py
 
 
parsing.py
parsing.py
 
 
print occurence of each org.py
print occurence of each org.py
 
 
print sample description1.py
print sample description1.py
 
 
print sample description_test.py
print sample description_test.py
 
 
pypar1.py
pypar1.py
 
 
pypar2.py
pypar2.py
 
 
qfilter_output matches.txt
qfilter_output matches.txt
 
 
qfilter_output_st33.txt
qfilter_output_st33.txt
 
 
regex problem test.py
regex problem test.py
 
 
remove blank lines.py
remove blank lines.py
 
 
remove funny gs from small.py
remove funny gs from small.py
 
 
remove laeding white space for mouse.py
remove laeding white space for mouse.py
 
 
rules.py
rules.py
 
 
rules1.py
rules1.py
 
 
rules1.pyc
rules1.pyc
 
 
rules1_no_print.py
rules1_no_print.py
 
 
rules1_no_print.pyc
rules1_no_print.pyc
 
 
rules_new.py
rules_new.py
 
 
rules_new.pyc
rules_new.pyc
 
 
test_new_rules.py
test_new_rules.py
 
 
test_new_rules.pyc
test_new_rules.pyc
 
 
testing rules working.py
testing rules working.py
 
 
transfer files acc to org.py
transfer files acc to org.py
 
 
tt.py
tt.py
 
 
ttt.py
ttt.py
 
 
unique filter matches from qfilter.txt
unique filter matches from qfilter.txt
 
 
unique organisms in 5k files.txt
unique organisms in 5k files.txt
 
 
using creed data.py
using creed data.py
 
 

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README

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What is this repository for?

  • Quick summary - This repo contains all codes in the PROPER folder i.e. it has all proper codes in my work.

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