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V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Jupyter Notebook 132 46
Wrangling short-read sequencing data for import into SILO
Fitness estimates of SARS-CoV-2 variants
BSSE COVID-19 sequencing of test swab samples
Tree inference from mitochondrial mutations
VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data
Probabilistic modeling of high-dimensional binary data in JAX
An interactive graphical user interface for visualizing mutation tree cohorts.
Deep exponential families for single-cell data.
