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<!-- README.md is generated from README.Rmd. Please edit that file --> | ||
<!-- README.md is generated from README.qmd. Please edit that file --> | ||
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# workshop_rproj | ||
# R Project Management | ||
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<!-- badges: start --> | ||
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This repo contains materials and resources for a 1-day course in project | ||
management in R. It is a quarto website, and as such adhered to basic | ||
[quarto conventions](https://quarto.org/docs/websites/). | ||
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- `slides` contains the slides for the course | ||
- `sections` contains the child quarto sections reused in the materials | ||
- `_quarto.yaml` contains the quarto configuration for the course | ||
- `index.qmd` contains the course homepage | ||
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The repo uses [renv](https://rstudio.github.io/renv/) to manage package | ||
dependencies. To install the packages used in this course, run | ||
`renv::restore()` from the project root. | ||
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As researchers grow in their skills, eventually the infrastructure | ||
surrounding the analysis will become an important catalyst for the | ||
reproducibility and longevity of analysis artefacts. Researchers are | ||
capable of creating complex and impressive projects, but it is unlikely | ||
to have benefited from any formal training or mentorship related to | ||
topics regarding project management. As a result of this, | ||
reproducibility and longevity of projects are likely to suffer. Learning | ||
aspects of project management is a vital, but rarely taught, skill when | ||
working on a project. While project management has some general | ||
guidelines that traverse fields, there are specific aspects to think | ||
about when working R, given R’s idiosyncrasies. | ||
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<div class="callout-tip"> | ||
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## Aims | ||
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- Understand what a working environment is and how R deals with them | ||
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- Successfully implement a project-oriented workflow | ||
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- Understand best-practice naming of files | ||
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- Know how to practice safe paths from R | ||
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- Understand basics of R package management | ||
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</div> | ||
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## Schedule [^1] | ||
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| | | | ||
|-------------------------------------------|-----------:| | ||
| Saving source and blank slates | 1 hour | | ||
| Project-oriented workflow | 1 hour | | ||
| How to name files & practicing safe paths | 1 hour | | ||
| Lunch break | 30 minutes | | ||
| R package management | 1.5 hours | | ||
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## Preparations | ||
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You might already have R and RStudio installed on your system. We highly | ||
recommend updating both of them to the latest version before the | ||
workshop, to ensure you can follow along all the exercises. | ||
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<div class="callout-note"> | ||
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### Install summary | ||
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- install/update [R](https://cran.rstudio.com/) | ||
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- install/update [RStudio](https://posit.co/download/rstudio-desktop/) | ||
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</div> | ||
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A new version of RStudio and R is recommended. Even if you have R and | ||
RStudio installed on your system, you should update all them before the | ||
workshop if you installed them longer than 2 months ago. | ||
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### R packages | ||
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In addition to R and RStudio, a series of R packages will also be needed | ||
to complete the workshop tasks. | ||
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``` r | ||
# Run in R | ||
install.packages(c( | ||
"remotes", # installing packages from GitHub | ||
"rmarkdown", # rendering reports | ||
"fs", # file system operations | ||
"here", # navigating paths | ||
"usethis", # for course materials | ||
"tidyverse" # data-wrangling | ||
)) | ||
``` | ||
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# Resources | ||
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- Workshop website: <https://www.capro.dev/workshop_rproj/> | ||
- [What They Forgot to Teach you about R](https://rstats.wtf/) | ||
- [Happy Git With R book](https://happygitwithr.com) | ||
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[^1]: This course relies heavily on materials from [What They Forgot to | ||
Teach you about R](https://rstats.wtf/), which is an excellent | ||
resource to dig deeper into to improve the way you work in R. |
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--- | ||
output: github_document | ||
--- | ||
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<!-- README.md is generated from README.qmd. Please edit that file --> | ||
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```{r, include = FALSE} | ||
knitr::opts_chunk$set( | ||
collapse = TRUE, | ||
comment = "#>" | ||
) | ||
``` | ||
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# R Project Management | ||
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<!-- badges: start --> | ||
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||
<!-- badges: end --> | ||
|
||
This repo contains materials and resources for a 1-day course in project management in R. | ||
It is a quarto website, and as such adhered to basic [quarto conventions](https://quarto.org/docs/websites/). | ||
|
||
- `slides` contains the slides for the course | ||
- `sections` contains the child quarto sections reused in the materials | ||
- `_quarto.yaml` contains the quarto configuration for the course | ||
- `index.qmd` contains the course homepage | ||
|
||
The repo uses [renv](https://rstudio.github.io/renv/) to manage package dependencies. | ||
To install the packages used in this course, run `renv::restore()` from the project root. | ||
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```{r child="sections/intro.qmd"} | ||
``` | ||
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```{r child="sections/aims.qmd"} | ||
``` | ||
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```{r child="sections/schedule.qmd"} | ||
``` | ||
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```{r child="sections/prep.qmd"} | ||
``` | ||
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```{r child="sections/resources.qmd"} | ||
``` | ||
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