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Version bump
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keiranmraine committed Aug 20, 2015
1 parent 1786fd4 commit de0e054
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Showing 7 changed files with 9 additions and 9 deletions.
2 changes: 1 addition & 1 deletion MYMETA.json
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Expand Up @@ -45,5 +45,5 @@
}
},
"release_status" : "stable",
"version" : "v1.1.0"
"version" : "v1.1.1"
}
2 changes: 1 addition & 1 deletion MYMETA.yml
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Expand Up @@ -27,4 +27,4 @@ requires:
Pod::Coverage: '0.23'
Sub::Exporter::Progressive: '0.001011'
Try::Tiny: '0.19'
version: v1.1.0
version: v1.1.1
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2 changes: 1 addition & 1 deletion lib/Sanger/CGP/Grass.pm
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Expand Up @@ -25,6 +25,6 @@ package Sanger::CGP::Grass;
use strict;
use Const::Fast qw(const);

our $VERSION = '1.1.0';
our $VERSION = '1.1.1';

1;
4 changes: 2 additions & 2 deletions testData/test_VcfConverterII_ann.vcf
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@@ -1,6 +1,6 @@
##fileformat=VCFv4.1
##fileDate=20140512
##source_20140512.1=VcfConverter.t_v1.1.0
##source_20140512.1=VcfConverter.t_v1.1.1
##reference=/nfs/users/nfs_l/las/CGP_github/grass/t/../testData/genome.fa
##contig=<ID=1,assembly=GRC37,length=249250621,species=HUMAN>
##contig=<ID=2,assembly=GRC37,length=243199373,species=HUMAN>
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##INFO=<ID=TRDS,Number=.,Type=String,Description="Reads from the tumour sample (PD1234a) that contribute to this rearrangement">
##INFO=<ID=NRDS,Number=.,Type=String,Description="Reads from the normal sample (PD1234b) that contribute to this rearrangement">
##FORMAT=<ID=RC,Number=1,Type=Integer,Description="Count of countributing reads">
##vcfProcessLog_20140512.1=<InputVCFSource=<VcfConverter.t>,InputVCFVer=<1.1.0>>
##vcfProcessLog_20140512.1=<InputVCFSource=<VcfConverter.t>,InputVCFVer=<1.1.1>>
##SAMPLE=<ID=NORMAL,Description="Normal",Accession=45,Platform=HiSeq,Protocol=genomic,SampleName=PD1234b,Source=ID_SAMPLE_COSMIC,Study=12346>
##SAMPLE=<ID=TUMOUR,Description="Mutant",Accession=123,Platform=HiSeq,Protocol=genomic,SampleName=PD1234a,Source=ID_SAMPLE_COSMIC,Study=12345>
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NORMAL TUMOUR
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4 changes: 2 additions & 2 deletions testData/test_VcfConverter_ann.vcf
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@@ -1,6 +1,6 @@
##fileformat=VCFv4.1
##fileDate=20140512
##source_20140512.1=VcfConverter.t_v1.1.0
##source_20140512.1=VcfConverter.t_v1.1.1
##reference=/nfs/users/nfs_l/las/CGP_github/grass/t/../testData/genome.fa
##contig=<ID=1,assembly=GRC37,length=249250621,species=HUMAN>
##contig=<ID=2,assembly=GRC37,length=243199373,species=HUMAN>
Expand Down Expand Up @@ -59,7 +59,7 @@
##INFO=<ID=TRDS,Number=.,Type=String,Description="Reads from the tumour sample (PD1234a) that contribute to this rearrangement">
##INFO=<ID=NRDS,Number=.,Type=String,Description="Reads from the normal sample (PD1234b) that contribute to this rearrangement">
##FORMAT=<ID=RC,Number=1,Type=Integer,Description="Count of countributing reads">
##vcfProcessLog_20140512.1=<InputVCFSource=<VcfConverter.t>,InputVCFVer=<1.1.0>>
##vcfProcessLog_20140512.1=<InputVCFSource=<VcfConverter.t>,InputVCFVer=<1.1.1>>
##SAMPLE=<ID=NORMAL,Description="Normal",Accession=45,Platform=HiSeq,Protocol=genomic,SampleName=PD1234b,Source=ID_SAMPLE_COSMIC,Study=12346>
##SAMPLE=<ID=TUMOUR,Description="Mutant",Accession=123,Platform=HiSeq,Protocol=genomic,SampleName=PD1234a,Source=ID_SAMPLE_COSMIC,Study=12345>
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NORMAL TUMOUR
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4 changes: 2 additions & 2 deletions testData/testout_Brass_ann.vcf
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@@ -1,6 +1,6 @@
##fileformat=VCFv4.1
##fileDate=20140512
##source_20140512.1=grass.pl_v1.1.0
##source_20140512.1=grass.pl_v1.1.1
##reference=/nfs/cancer_ref01/human/37/genome.fa
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant. (All sequence is on the plus strand and in the forward direction).">
##INFO=<ID=MATEID,Number=1,Type=String,Description="ID of mate breakend">
Expand Down Expand Up @@ -34,7 +34,7 @@
##INFO=<ID=TRDS,Number=.,Type=String,Description="Reads from the tumour sample () that contribute to this rearrangement">
##INFO=<ID=NRDS,Number=.,Type=String,Description="Reads from the normal sample () that contribute to this rearrangement">
##FORMAT=<ID=RC,Number=1,Type=Integer,Description="Count of countributing reads">
##vcfProcessLog_20140512.1=<InputVCFSource=<grass.pl>,InputVCFVer=<1.1.0>>
##vcfProcessLog_20140512.1=<InputVCFSource=<grass.pl>,InputVCFVer=<1.1.1>>
##SAMPLE=<ID=NORMAL,Description="Normal",SampleName=>
##SAMPLE=<ID=TUMOUR,Description="Mutant",SampleName=>
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NORMAL TUMOUR
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