Update Tabix query to query_full. Allows GRCh38 contig names to b…

…e handled.
cancerit · Mar 26, 2018 · 462b996 · 462b996
1 parent 3336c05
commit 462b996
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/lib/Sanger/CGP/Vagrent/TranscriptSource/FileBasedTranscriptSource.pm b/lib/Sanger/CGP/Vagrent/TranscriptSource/FileBasedTranscriptSource.pm
@@ -128,7 +128,7 @@ sub _getTranscriptsFromCache {
   } else {
     $min = ($gp->getMinPos - $SEARCH_BUFFER);
   }
-  my $iter = $self->{_cache_tbx}->query(sprintf '%s:%d-%d', $gp->getChr(),$min,$max);
+  my $iter = $self->{_cache_tbx}->query_full($gp->getChr(),$min,$max);
   return undef unless defined $iter;
   my $out = undef;
   while(my $ret = $iter->next){