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For RNA-seq data #17

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VikArz02 opened this issue Sep 8, 2022 · 1 comment
Open

For RNA-seq data #17

VikArz02 opened this issue Sep 8, 2022 · 1 comment

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@VikArz02
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VikArz02 commented Sep 8, 2022

Hi,
thank you for developing a good package.

I have the strange question. Can i adapt this package for RNA-seq data or it can be used only for single-cell?

@dosorio
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dosorio commented Sep 8, 2022

Hi @VikArz02,

I appreciate your interest in our tool. scTenifoldKnk was developed for single-cell RNA-seq data. We haven't tested its performance on RNA-seq data. Additionally, the structures of the data are designed for sparse matrices. You may adapt it to work in your samples if you have enough sample size to construct an accurate gene regulatory network.

Please let me know if you have any other questions,

Best wishes,

Daniel

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