Estimates probabilities and expected numbers of mutations in the tumor genome based on observed mutation frequencies.
variantprobs
depends on R
package edgeR. To install edgeR
, run the following commands in R
:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("edgeR")
The easiest way to install variantprobs
is via R
package devtools. Run the following commands in R
to install devtools
, if it is not already installed:
if (!requireNamespace("devtools", quietly = TRUE))
install.packages("devtools")
Then install variantprobs
as follows:
devtools::install_github("c7rishi/variantprobs")