R package variantprobs

Estimates probabilities and expected numbers of mutations in the tumor genome based on observed mutation frequencies.

How to install

Installing dependencies

variantprobs depends on R package edgeR. To install edgeR, run the following commands in R:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("edgeR")

Installing variantprobs

The easiest way to install variantprobs is via R package devtools. Run the following commands in R to install devtools, if it is not already installed:

if (!requireNamespace("devtools", quietly = TRUE))
    install.packages("devtools")

Then install variantprobs as follows:

devtools::install_github("c7rishi/variantprobs")