Merge pull request #152 from hvdosser/uv_fillvalue

Added a FillValue for u, v to allow profile submission to IOOS
c-proof · Jun 16, 2023 · bc16ef4 · bc16ef4
2 parents c4e8a77 + fae4226
commit bc16ef4
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/pyglider/ncprocess.py b/pyglider/ncprocess.py
@@ -67,6 +67,12 @@ def extract_timeseries_profiles(inname, outdir, deploymentyaml):
 
                     dss['v'] = dss.water_velocity_northward.mean()
                     dss['v'].attrs = profile_meta['v']
+                elif ('water_velocity_eastward' not in dss.keys()) and ('_FillValue' in profile_meta['u']):
+                    dss['u'] = profile_meta['u']['_FillValue']
+                    dss['u'].attrs = profile_meta['u']
+
+                    dss['v'] = profile_meta['v']['_FillValue']
+                    dss['v'].attrs = profile_meta['v']
 
                 dss['profile_id'] = np.array(p*1.0)
                 dss['profile_id'].attrs = profile_meta['profile_id']