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* main: (129 commits) docs on specifying chunks in to_zarr encoding arg (pydata#6542) [skip-ci] List count under Aggregation (pydata#6711) Add `Dataset.dtypes` property (pydata#6706) try to import `UndefinedVariableError` from the new location (pydata#6701) DOC: note of how `chunks` can be defined (pydata#6696) pdyap version dependent client.open_url call (pydata#6656) use `pytest-reportlog` to generate upstream-dev CI failure reports (pydata#6699) [pre-commit.ci] pre-commit autoupdate (pydata#6694) Bump actions/setup-python from 3 to 4 (pydata#6692) Fix Dataset.where with drop=True and mixed dims (pydata#6690) pass kwargs through from save_mfdataset to to_netcdf (pydata#6686) Docs: indexing.rst finetuning (pydata#6685) use micromamba instead of mamba (pydata#6674) install the development version of `matplotlib` into the upstream-dev CI (pydata#6675) Add whatsnew section for v2022.06.0 release notes for 2022.06.0rc0 release notes for the pre-release (pydata#6676) more testpypi workflow fixes (pydata#6673) thin: add examples (pydata#6663) Update multidimensional-coords.ipynb (pydata#6672) ...
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,8 +1,14 @@ | ||
| blank_issues_enabled: false | ||
| contact_links: | ||
| - name: Usage question | ||
| - name: ❓ Usage question | ||
| url: https://github.com/pydata/xarray/discussions | ||
| about: | | ||
| Ask questions and discuss with other community members here. | ||
| If you have a question like "How do I concatenate a list of datasets?" then | ||
| please include a self-contained reproducible example if possible. | ||
| - name: 🗺️ Raster analysis usage question | ||
| url: https://github.com/corteva/rioxarray/discussions | ||
| about: | | ||
| If you are using the rioxarray extension (engine='rasterio'), or have questions about | ||
| raster analysis such as geospatial formats, coordinate reprojection, etc., | ||
| please use the rioxarray discussion forum. |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -30,116 +30,80 @@ jobs: | |
| with: | ||
| keyword: "[skip-ci]" | ||
|
|
||
| test: | ||
| name: ${{ matrix.os }} ${{ matrix.env }} | ||
| runs-on: ${{ matrix.os }} | ||
| doctest: | ||
| name: Doctests | ||
| runs-on: "ubuntu-latest" | ||
| needs: detect-ci-trigger | ||
| if: needs.detect-ci-trigger.outputs.triggered == 'false' | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| os: ["ubuntu-latest"] | ||
| env: | ||
| [ | ||
| # Minimum python version: | ||
| "py38-bare-minimum", | ||
| "py38-min-all-deps", | ||
|
|
||
| # Latest python version: | ||
| "py39-all-but-dask", | ||
| "py39-flaky", | ||
| ] | ||
|
|
||
| env: | ||
| CONDA_ENV_FILE: ci/requirements/environment.yml | ||
| PYTHON_VERSION: "3.10" | ||
|
|
||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| with: | ||
| fetch-depth: 0 # Fetch all history for all branches and tags. | ||
|
|
||
| - name: Set environment variables | ||
| - name: set environment variables | ||
| run: | | ||
| if [[ ${{ matrix.env }} == "py39-flaky" ]] ; | ||
| then | ||
| echo "CONDA_ENV_FILE=ci/requirements/environment.yml" >> $GITHUB_ENV | ||
| echo "PYTEST_EXTRA_FLAGS=--run-flaky --run-network-tests" >> $GITHUB_ENV | ||
| else | ||
| echo "CONDA_ENV_FILE=ci/requirements/${{ matrix.env }}.yml" >> $GITHUB_ENV | ||
| fi | ||
| - name: Cache conda | ||
| uses: actions/cache@v2 | ||
| with: | ||
| path: ~/conda_pkgs_dir | ||
| key: | ||
| ${{ runner.os }}-conda-${{ matrix.env }}-${{ | ||
| hashFiles('ci/requirements/**.yml') }} | ||
| echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV | ||
| - uses: conda-incubator/setup-miniconda@v2 | ||
| - name: Setup micromamba | ||
| uses: mamba-org/provision-with-micromamba@de032af7fb3675649f3d4bbdda85178ba412ee41 | ||
| with: | ||
| channels: conda-forge | ||
| channel-priority: strict | ||
| mamba-version: "*" | ||
| activate-environment: xarray-tests | ||
| auto-update-conda: false | ||
| python-version: 3.9 | ||
| use-only-tar-bz2: true | ||
|
|
||
| - name: Install conda dependencies | ||
| run: | | ||
| mamba env update -f $CONDA_ENV_FILE | ||
| environment-file: ${{env.CONDA_ENV_FILE}} | ||
| environment-name: xarray-tests | ||
| extra-specs: | | ||
| python=${{env.PYTHON_VERSION}} | ||
| cache-env: true | ||
| cache-env-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | ||
|
|
||
| - name: Install xarray | ||
| run: | | ||
| python -m pip install --no-deps -e . | ||
| - name: Version info | ||
| run: | | ||
| conda info -a | ||
| conda list | ||
| python xarray/util/print_versions.py | ||
| - name: Import xarray | ||
| run: | | ||
| python -c "import xarray" | ||
| - name: Run tests | ||
| - name: Run doctests | ||
| run: | | ||
| python -m pytest -n 4 \ | ||
| --cov=xarray \ | ||
| --cov-report=xml \ | ||
| $PYTEST_EXTRA_FLAGS | ||
| python -m pytest --doctest-modules xarray --ignore xarray/tests | ||
| - name: Upload code coverage to Codecov | ||
| uses: codecov/[email protected] | ||
| with: | ||
| file: ./coverage.xml | ||
| flags: unittests,${{ matrix.env }} | ||
| env_vars: RUNNER_OS | ||
| name: codecov-umbrella | ||
| fail_ci_if_error: false | ||
| doctest: | ||
| name: Doctests | ||
| mypy: | ||
| name: Mypy | ||
| runs-on: "ubuntu-latest" | ||
| needs: detect-ci-trigger | ||
| # temporarily skipping due to https://github.com/pydata/xarray/issues/6551 | ||
| if: needs.detect-ci-trigger.outputs.triggered == 'false' | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| env: | ||
| CONDA_ENV_FILE: ci/requirements/environment.yml | ||
| PYTHON_VERSION: "3.10" | ||
|
|
||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| with: | ||
| fetch-depth: 0 # Fetch all history for all branches and tags. | ||
| - uses: conda-incubator/setup-miniconda@v2 | ||
| with: | ||
| channels: conda-forge | ||
| channel-priority: strict | ||
| mamba-version: "*" | ||
| activate-environment: xarray-tests | ||
| auto-update-conda: false | ||
| python-version: "3.9" | ||
|
|
||
| - name: Install conda dependencies | ||
| - name: set environment variables | ||
| run: | | ||
| mamba env update -f ci/requirements/environment.yml | ||
| echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV | ||
| - name: Setup micromamba | ||
| uses: mamba-org/provision-with-micromamba@de032af7fb3675649f3d4bbdda85178ba412ee41 | ||
| with: | ||
| environment-file: ${{env.CONDA_ENV_FILE}} | ||
| environment-name: xarray-tests | ||
| extra-specs: | | ||
| python=${{env.PYTHON_VERSION}} | ||
| cache-env: true | ||
| cache-env-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | ||
| - name: Install xarray | ||
| run: | | ||
| python -m pip install --no-deps -e . | ||
|
|
@@ -148,9 +112,13 @@ jobs: | |
| conda info -a | ||
| conda list | ||
| python xarray/util/print_versions.py | ||
| - name: Run doctests | ||
| - name: Install mypy | ||
| run: | | ||
| python -m pytest --doctest-modules xarray --ignore xarray/tests | ||
| python -m pip install mypy | ||
| - name: Run mypy | ||
| run: | | ||
| python -m mypy --install-types --non-interactive | ||
| min-version-policy: | ||
| name: Minimum Version Policy | ||
|
|
@@ -161,20 +129,28 @@ jobs: | |
| run: | ||
| shell: bash -l {0} | ||
|
|
||
| strategy: | ||
| matrix: | ||
| environment-file: ["bare-minimum", "min-all-deps"] | ||
| fail-fast: false | ||
|
|
||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| with: | ||
| fetch-depth: 0 # Fetch all history for all branches and tags. | ||
| - uses: conda-incubator/setup-miniconda@v2 | ||
|
|
||
| - name: Setup micromamba | ||
| uses: mamba-org/provision-with-micromamba@de032af7fb3675649f3d4bbdda85178ba412ee41 | ||
| with: | ||
| environment-name: xarray-tests | ||
| environment-file: false | ||
| extra-specs: | | ||
| python=3.10 | ||
| pyyaml | ||
| conda | ||
| python-dateutil | ||
| channels: conda-forge | ||
| channel-priority: strict | ||
| mamba-version: "*" | ||
| auto-update-conda: false | ||
| python-version: "3.9" | ||
|
|
||
| - name: minimum versions policy | ||
| run: | | ||
| mamba install -y pyyaml conda python-dateutil | ||
| python ci/min_deps_check.py ci/requirements/py38-bare-minimum.yml | ||
| python ci/min_deps_check.py ci/requirements/py38-min-all-deps.yml | ||
| python ci/min_deps_check.py ci/requirements/${{ matrix.environment-file }}.yml | ||
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