Data analysis code for Escherichia coli Lrp regulates one-third of the genome via direct, cooperative, and indirect routes
This repository contains both code and instructions to reproduce the
data analysis for both ChIP-seq (ChIP_analysis) and RNA-seq
(RNA_seq_analysis) in the following publication:
Kroner, G. M., Wolfe, M. B. & Freddolino, P. L. Escherichia coli Lrp
regulates one-third of the genome via direct, cooperative, and
indirect routes. Journal of Bacteriology JB.00411-18 (2018).
doi:10.1128/JB.00411-18
In press at the Journal of Bacteriology and available online here. A previous version of this manuscript is also available at bioRxiv here.
Any questions or comments about the manuscript can be addressed to the corresponding author Peter Freddolino ([email protected]).
Additional questions about the code in this repository can be addressed to Michael Wolfe ([email protected]).