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Dev -> Staging #1317

Merged
merged 6 commits into from
Jul 2, 2024
Merged

Dev -> Staging #1317

merged 6 commits into from
Jul 2, 2024

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nikellepetrillo
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Description

Give your PR a concise yet descriptive title.
Please explain the changes you made here.
Explain the motivation for making this change. What existing problem does the pull request solve?
Mention any issues fixed, addressed, or otherwise related to this pull request, including issue numbers or hard links for issues in other repos.
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Checklist

If you can answer "yes" to the following items, please add a checkmark next to the appropriate checklist item(s) and notify our WARP documentation team by tagging either @ekiernan or @kayleemathews in a comment on this PR.

  • Did you add inputs, outputs, or tasks to a workflow?
  • Did you modify, delete or move: file paths, file names, input names, output names, or task names?
  • If you made a changelog update, did you update the pipeline version number?

ekiernan and others added 5 commits June 28, 2024 11:10
Updated Paired-Tag workflow documentation to reflect release of v1.0.0
* Adding the actions file

* Removing unnecessary requirements.txt step

* ensuring that the workflow is operating on an actual branch rather than a detached HEAD

* Update pipeline versions

* Figuring out the working directory

* Update pipeline versions

* adding -e to the echo command, to enable the interpretation of backslash escapes

* Update pipeline versions

* Putting in the final triggers

---------

Co-authored-by: GitHub Action <[email protected]>
Added keeper cell metrics, expected_cells input, and, new documentation for library-level metrics.
* rename some intermediate inputs for paired tag demultiplexing

* make compareTabix task fail if lines are gt than 100

* changelogs

* changelogs
* Adding the actions file

* Removing unnecessary requirements.txt step

* ensuring that the workflow is operating on an actual branch rather than a detached HEAD

* Update pipeline versions

* Figuring out the working directory

* Update pipeline versions

* adding -e to the echo command, you enable the interpretation of backslash escapes

* Update pipeline versions

* Putting in the final triggers

* Changing triggers because direct commit to branches didn't work because of branch protection rules

* Removed commented out code

---------

Co-authored-by: GitHub Action <[email protected]>
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github-actions bot commented Jul 2, 2024

DO NOT SQUASH MERGE!!!

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github-actions bot commented Jul 2, 2024

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/staging':
All changelog files are valid for this release.

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github-actions bot commented Jul 2, 2024

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

* rename some intermediate inputs for paired tag demultiplexing

* make compareTabix task fail if lines are gt than 100

* added additional checks on h5ad for ATAC

* adding colon

* fix stats variable

---------

Co-authored-by: ekiernan <[email protected]>
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github-actions bot commented Jul 2, 2024

DO NOT SQUASH MERGE!!!

Copy link

github-actions bot commented Jul 2, 2024

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/staging':
All changelog files are valid for this release.

Copy link

github-actions bot commented Jul 2, 2024

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@nikellepetrillo nikellepetrillo merged commit ddc7397 into staging Jul 2, 2024
10 of 11 checks passed
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5 participants