Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

azurize optimus #1228

Merged
merged 53 commits into from
Mar 6, 2024
Merged

azurize optimus #1228

merged 53 commits into from
Mar 6, 2024

Commits on Sep 28, 2023

  1. add logic to choose which docker

    @nikellepetrillo
    nikellepetrillo committed Sep 28, 2023
    Configuration menu
    Copy the full SHA
    3057662 View commit details
    Browse the repository at this point in the history

  2. fix param_meta and import

    @nikellepetrillo
    nikellepetrillo committed Sep 28, 2023
    Configuration menu
    Copy the full SHA
    09bd338 View commit details
    Browse the repository at this point in the history

  3. add cloud provider to checkinput

    @nikellepetrillo
    nikellepetrillo committed Sep 28, 2023
    Configuration menu
    Copy the full SHA
    219e99d View commit details
    Browse the repository at this point in the history

  4. handle hard coded white list paths in CheckInputs.wdl

    @nikellepetrillo
    nikellepetrillo committed Sep 28, 2023
    Configuration menu
    Copy the full SHA
    e2e70c9 View commit details
    Browse the repository at this point in the history

Commits on Sep 29, 2023

  1. last few dockers

    @nikellepetrillo
    nikellepetrillo committed Sep 29, 2023
    Configuration menu
    Copy the full SHA
    970eb98 View commit details
    Browse the repository at this point in the history

  2. last few dockers

    @nikellepetrillo
    nikellepetrillo committed Sep 29, 2023
    Configuration menu
    Copy the full SHA
    4f40a11 View commit details
    Browse the repository at this point in the history

  3. last few dockers

    @nikellepetrillo
    nikellepetrillo committed Sep 29, 2023
    Configuration menu
    Copy the full SHA
    3a9784a View commit details
    Browse the repository at this point in the history

  4. change error msg

    @nikellepetrillo
    nikellepetrillo committed Sep 29, 2023
    Configuration menu
    Copy the full SHA
    adc8938 View commit details
    Browse the repository at this point in the history

Commits on Oct 2, 2023

  1. use ubuntu image

    @nikellepetrillo
    nikellepetrillo committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    46150d7 View commit details
    Browse the repository at this point in the history

  2. use ubuntu image

    @nikellepetrillo
    nikellepetrillo committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    e63c32d View commit details
    Browse the repository at this point in the history

  3. change whitelists

    @nikellepetrillo
    nikellepetrillo committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    8c4785c View commit details
    Browse the repository at this point in the history

Commits on Oct 4, 2023

  1. point to azure public whitelists

    @nikellepetrillo
    nikellepetrillo committed Oct 4, 2023
    Configuration menu
    Copy the full SHA
    eec78b0 View commit details
    Browse the repository at this point in the history

  2. add sas token

    @nikellepetrillo
    nikellepetrillo committed Oct 4, 2023
    Configuration menu
    Copy the full SHA
    3044afe View commit details
    Browse the repository at this point in the history

  3. echo whitelist

    @nikellepetrillo
    nikellepetrillo committed Oct 4, 2023
    Configuration menu
    Copy the full SHA
    2f5aea1 View commit details
    Browse the repository at this point in the history

  4. echo whitelist

    @nikellepetrillo
    nikellepetrillo committed Oct 4, 2023
    Configuration menu
    Copy the full SHA
    efdcda6 View commit details
    Browse the repository at this point in the history

Commits on Oct 5, 2023

  1. testing for coa

    @nikellepetrillo
    nikellepetrillo committed Oct 5, 2023
    Configuration menu
    Copy the full SHA
    3df2c28 View commit details
    Browse the repository at this point in the history

  2. testing for coa

    @nikellepetrillo
    nikellepetrillo committed Oct 5, 2023
    Configuration menu
    Copy the full SHA
    103cc48 View commit details
    Browse the repository at this point in the history

Commits on Oct 6, 2023

  1. change back to terra buckets for whitelists

    @nikellepetrillo
    nikellepetrillo committed Oct 6, 2023
    Configuration menu
    Copy the full SHA
    c5fecb2 View commit details
    Browse the repository at this point in the history

  2. change whitelists to point at public azure bucket

    @nikellepetrillo
    nikellepetrillo committed Oct 6, 2023
    Configuration menu
    Copy the full SHA
    bacefe7 View commit details
    Browse the repository at this point in the history

Commits on Oct 10, 2023

  1. files to strings

    @nikellepetrillo
    nikellepetrillo committed Oct 10, 2023
    Configuration menu
    Copy the full SHA
    305485f View commit details
    Browse the repository at this point in the history

  2. print statemtns to checkinputs

    @nikellepetrillo
    nikellepetrillo committed Oct 10, 2023
    Configuration menu
    Copy the full SHA
    09c69e5 View commit details
    Browse the repository at this point in the history

  3. string to files

    @nikellepetrillo
    nikellepetrillo committed Oct 10, 2023
    Configuration menu
    Copy the full SHA
    9c39ff6 View commit details
    Browse the repository at this point in the history

Commits on Oct 11, 2023

  1. change to terra bucket paths

    @nikellepetrillo
    nikellepetrillo committed Oct 11, 2023
    Configuration menu
    Copy the full SHA
    bba5226 View commit details
    Browse the repository at this point in the history

Commits on Oct 12, 2023

  1. strings not files

    @nikellepetrillo
    nikellepetrillo committed Oct 12, 2023
    Configuration menu
    Copy the full SHA
    8eaf292 View commit details
    Browse the repository at this point in the history

Commits on Oct 13, 2023

  1. append sas token

    @nikellepetrillo
    nikellepetrillo committed Oct 13, 2023
    Configuration menu
    Copy the full SHA
    4aef7d6 View commit details
    Browse the repository at this point in the history

  2. append sas token

    @nikellepetrillo
    nikellepetrillo committed Oct 13, 2023
    Configuration menu
    Copy the full SHA
    fa1713d View commit details
    Browse the repository at this point in the history

Commits on Oct 16, 2023

  1. append sas and use strings

    @nikellepetrillo
    nikellepetrillo committed Oct 16, 2023
    Configuration menu
    Copy the full SHA
    6e0536d View commit details
    Browse the repository at this point in the history

  2. back to bucket urls

    @nikellepetrillo
    nikellepetrillo committed Oct 16, 2023
    Configuration menu
    Copy the full SHA
    ab042b9 View commit details
    Browse the repository at this point in the history

  3. back to bucket urls

    @nikellepetrillo
    nikellepetrillo committed Oct 16, 2023
    Configuration menu
    Copy the full SHA
    4493699 View commit details
    Browse the repository at this point in the history

  4. use google cloud urls

    @nikellepetrillo
    nikellepetrillo committed Oct 16, 2023
    Configuration menu
    Copy the full SHA
    26231e7 View commit details
    Browse the repository at this point in the history

Commits on Oct 18, 2023

  1. using public urls

    @nikellepetrillo
    nikellepetrillo committed Oct 18, 2023
    Configuration menu
    Copy the full SHA
    5129132 View commit details
    Browse the repository at this point in the history

  2. trying to export sas_token

    @nikellepetrillo
    nikellepetrillo committed Oct 18, 2023
    Configuration menu
    Copy the full SHA
    1ad1160 View commit details
    Browse the repository at this point in the history

  3. trying to export sas_token

    @nikellepetrillo
    nikellepetrillo committed Oct 18, 2023
    Configuration menu
    Copy the full SHA
    d19036a View commit details
    Browse the repository at this point in the history

  4. trying to export sas_token

    @nikellepetrillo
    nikellepetrillo committed Oct 18, 2023
    Configuration menu
    Copy the full SHA
    b8a826c View commit details
    Browse the repository at this point in the history

Commits on Oct 19, 2023

  1. terra on gcp

    @nikellepetrillo
    nikellepetrillo committed Oct 19, 2023
    Configuration menu
    Copy the full SHA
    755cadd View commit details
    Browse the repository at this point in the history

Commits on Feb 22, 2024

  1. update azure whitelist files

    @phendriksen100
    phendriksen100 committed Feb 22, 2024
    Configuration menu
    Copy the full SHA
    07ca768 View commit details
    Browse the repository at this point in the history

Commits on Mar 1, 2024

  1. Merge branch 'azurized_wdls' into np_pd-2368_optimus_runs_on_ToA

    @nikellepetrillo
    nikellepetrillo authored Mar 1, 2024
    Configuration menu
    Copy the full SHA
    d8d988f View commit details
    Browse the repository at this point in the history

  2. changelogs

    @nikellepetrillo
    nikellepetrillo committed Mar 1, 2024
    Configuration menu
    Copy the full SHA
    f1e178f View commit details
    Browse the repository at this point in the history

  3. changelogs

    @nikellepetrillo
    nikellepetrillo committed Mar 1, 2024
    Configuration menu
    Copy the full SHA
    efee8cb View commit details
    Browse the repository at this point in the history

  4. changelogs

    @nikellepetrillo
    nikellepetrillo committed Mar 1, 2024
    Configuration menu
    Copy the full SHA
    c453e88 View commit details
    Browse the repository at this point in the history

  5. changelogs

    @nikellepetrillo
    nikellepetrillo committed Mar 1, 2024
    Configuration menu
    Copy the full SHA
    6770f91 View commit details
    Browse the repository at this point in the history

Commits on Mar 4, 2024

  1. fix some inputs

    @nikellepetrillo
    nikellepetrillo committed Mar 4, 2024
    Configuration menu
    Copy the full SHA
    ac3bbf2 View commit details
    Browse the repository at this point in the history

  2. fix some inputs

    @nikellepetrillo
    nikellepetrillo committed Mar 4, 2024
    Configuration menu
    Copy the full SHA
    cb19404 View commit details
    Browse the repository at this point in the history

  3. fix some inputs

    @nikellepetrillo
    nikellepetrillo committed Mar 4, 2024
    Configuration menu
    Copy the full SHA
    55fc7ff View commit details
    Browse the repository at this point in the history

  4. fix some inputs

    @nikellepetrillo
    nikellepetrillo committed Mar 4, 2024
    Configuration menu
    Copy the full SHA
    78e4513 View commit details
    Browse the repository at this point in the history

  5. update optimus dockers

    @nikellepetrillo
    nikellepetrillo committed Mar 4, 2024
    Configuration menu
    Copy the full SHA
    c602c3f View commit details
    Browse the repository at this point in the history

Commits on Mar 5, 2024

  1. warp_tools_docker_path for staralign

    @nikellepetrillo
    nikellepetrillo committed Mar 5, 2024
    Configuration menu
    Copy the full SHA
    fc5d40a View commit details
    Browse the repository at this point in the history

  2. stop using ice lake as default

    @nikellepetrillo
    nikellepetrillo committed Mar 5, 2024
    Configuration menu
    Copy the full SHA
    94f8721 View commit details
    Browse the repository at this point in the history

  3. update pipeline docs

    @kayleemathews
    kayleemathews committed Mar 5, 2024
    Configuration menu
    Copy the full SHA
    b817d80 View commit details
    Browse the repository at this point in the history

  4. 2 threads

    @nikellepetrillo
    nikellepetrillo committed Mar 5, 2024
    Configuration menu
    Copy the full SHA
    12ed929 View commit details
    Browse the repository at this point in the history

  5. Merge remote-tracking branch 'origin/np_pd-2368_optimus_runs_on_ToA' … 

    …into np_pd-2368_optimus_runs_on_ToA
    @nikellepetrillo
    nikellepetrillo committed Mar 5, 2024
    Configuration menu
    Copy the full SHA
    1d11175 View commit details
    Browse the repository at this point in the history

Commits on Mar 6, 2024

  1. counting mode

    @nikellepetrillo
    nikellepetrillo committed Mar 6, 2024
    Configuration menu
    Copy the full SHA
    e9b5a36 View commit details
    Browse the repository at this point in the history

  2. changelogs

    @nikellepetrillo
    nikellepetrillo committed Mar 6, 2024
    Configuration menu
    Copy the full SHA
    708b545 View commit details
    Browse the repository at this point in the history