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fix
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golu099 committed Nov 30, 2023
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Expand Up @@ -39,7 +39,6 @@ task trim_rmdup_subsamp {
assembly.py --version | tee VERSION
#BAM ->FASTQ-> OutBam? https://github.com/broadinstitute/viral-assemble/blob/80bcc1da5c6a0174362ca9fd8bc0b49ee0b4103b/assembly.py#L91
assembly.py trim_rmdup_subsamp \
#if you suspect spaces in the filename use ""
"~{inBam}" \
"~{clipDb}" \
"test1.bam" \
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