Merge branch 'master' into ct-add-task-get-from-web

broadinstitute · Nov 5, 2024 · da1d311 · da1d311
2 parents 6c6d864 + f553664
commit da1d311
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Showing 3 changed files with 6 additions and 6 deletions.
diff --git a/pipes/WDL/tasks/tasks_nextstrain.wdl b/pipes/WDL/tasks/tasks_nextstrain.wdl
@@ -53,7 +53,7 @@ task nextclade_one_sample {
         File? gene_annotations_json
         String? dataset_name
         Int    disk_size = 50
-        String docker = "nextstrain/nextclade:3.8.2"
+        String docker = "nextstrain/nextclade:3.9.1"
     }
     String basename = basename(genome_fasta, ".fasta")
     command <<<
@@ -144,7 +144,7 @@ task nextclade_many_samples {
         String       basename
         File?        genome_ids_setdefault_blank
         Int          disk_size = 150
-        String       docker = "nextstrain/nextclade:3.8.2"
+        String       docker = "nextstrain/nextclade:3.9.1"
     }
     command <<<
         set -e

diff --git a/pipes/WDL/tasks/tasks_sarscov2.wdl b/pipes/WDL/tasks/tasks_sarscov2.wdl
@@ -10,7 +10,7 @@ task pangolin_one_sample {
         Float?  max_ambig
         String? analysis_mode
         Boolean update_dbs_now=false
-        String  docker = "quay.io/staphb/pangolin:4.3.1-pdata-1.29"
+        String  docker = "quay.io/staphb/pangolin:4.3.1-pdata-1.30"
     }
     String basename = basename(genome_fasta, ".fasta")
     Int disk_size = 50
@@ -93,7 +93,7 @@ task pangolin_many_samples {
         String?      analysis_mode
         Boolean      update_dbs_now=false
         String       basename
-        String       docker = "quay.io/staphb/pangolin:4.3.1-pdata-1.29"
+        String       docker = "quay.io/staphb/pangolin:4.3.1-pdata-1.30"
     }
     Int disk_size = 100
     command <<<

diff --git a/requirements-modules.txt b/requirements-modules.txt
@@ -7,5 +7,5 @@ broadinstitute/beast-beagle-cuda=1.10.5pre
 broadinstitute/ncbi-tools=2.10.7.10
 nextstrain/base=build-20240318T173028Z
 andersenlabapps/ivar=1.3.1
-quay.io/staphb/pangolin=4.3.1-pdata-1.29
-nextstrain/nextclade=3.8.2
+quay.io/staphb/pangolin=4.3.1-pdata-1.30
+nextstrain/nextclade=3.9.1