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better Gnarly error message #8270

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merged 1 commit into from
Mar 29, 2023
Merged

better Gnarly error message #8270

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4 changes: 2 additions & 2 deletions ...va/org/broadinstitute/hellbender/tools/walkers/gnarlyGenotyper/GnarlyGenotyperEngine.java
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Original file line number Diff line number Diff line change
Expand Up @@ -257,7 +257,7 @@ else if (variant.hasAttribute(GATKVCFConstants.AS_RAW_QUAL_APPROX_KEY)) {
}
}
catch (final Exception e) {
throw new IllegalStateException("Something went wrong: ", e);
throw new IllegalStateException("Unable to instantiate InfoFieldAnnotation: ", e);
}
}
//since AS_FS and AS_SOR share the same raw key, we have to wait to remove raw keys until all the finalized values are added
Expand Down Expand Up @@ -527,4 +527,4 @@ private static int[] getSBFieldAsIntArray(Genotype g) {
}
}
}
}
}