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Add a test to validate WDLs in the scripts directory. #7826

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merged 1 commit into from
May 4, 2022

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gbggrant
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@gbggrant gbggrant commented May 3, 2022

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@gbggrant gbggrant requested a review from cmnbroad May 3, 2022 21:10
@gbggrant gbggrant marked this pull request as ready for review May 3, 2022 21:15
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gbggrant commented May 3, 2022

@cmnbroad I saw your comment in #7822. I'm trying to add WDL validation here, using the infrastructure in gradle. I was interested here in just validating the WDLs in the scripts directory.

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@gbggrant One comment on naming, otherwise looks good to merge once thats addressed. Thanks for doing this.

#test wdl validation
wdlValidation:
runs-on: ubuntu-latest
name: Validate WDLs using womtools
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Can you modify the names (workflow names, name property, gradle task names, and comments) so the "scripts" and "generated" versions are more clearly distinguished from each other (i.e., validteScriptsWDL and validateGeneratedWDL or something similar). Its hard to tell from looking at just this definition that it's not doing the autogenerated validation.

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👍 with Chris's suggestions

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codecov bot commented May 4, 2022

Codecov Report

Merging #7826 (91af7ec) into master (c72f2a8) will decrease coverage by 0.002%.
The diff coverage is n/a.

❗ Current head 91af7ec differs from pull request most recent head db7b43f. Consider uploading reports for the commit db7b43f to get more accurate results

@@               Coverage Diff               @@
##              master     #7826       +/-   ##
===============================================
- Coverage     86.955%   86.953%   -0.002%     
+ Complexity     36903     36902        -1     
===============================================
  Files           2214      2214               
  Lines         173540    173540               
  Branches       18735     18735               
===============================================
- Hits          150902    150899        -3     
- Misses         16036     16039        +3     
  Partials        6602      6602               
Impacted Files Coverage Δ
.../hellbender/utils/python/PythonUnitTestRunner.java 75.410% <0.000%> (-3.279%) ⬇️
...nder/utils/runtime/StreamingProcessController.java 66.818% <0.000%> (-0.455%) ⬇️
...itute/hellbender/tools/LocalAssemblerUnitTest.java 92.448% <0.000%> (ø)

Renamed existing test for validating generated WDLs.
@gbggrant gbggrant merged commit e0e6669 into master May 4, 2022
@gbggrant gbggrant deleted the gg_AddWdlValidationTest branch May 4, 2022 20:13
gbggrant added a commit that referenced this pull request May 4, 2022
Renamed existing test for validating generated WDLs.
gbggrant added a commit that referenced this pull request May 5, 2022
* Added a test to validate WDLs in the scripts directory. (#7826)
Renamed existing test for validating generated WDLs.
This was referenced Mar 17, 2023
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3 participants