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Ah change output of reblocking wdl to external path #7575

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merged 3 commits into from
Nov 23, 2021
Merged

Ah change output of reblocking wdl to external path #7575

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f8697ae
change outputs to external bucket path
ahaessly Nov 20, 2021
2bde570
dockstore
ahaessly Nov 20, 2021
618465f
remove dockstore
ahaessly Nov 23, 2021
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8 changes: 4 additions & 4 deletions scripts/variantstore/wdl/GvsAoUReblockGvcf.wdl
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Original file line number Diff line number Diff line change
Expand Up @@ -36,8 +36,8 @@ workflow GvsAoUReblockGvcf {
}

output {
File reblocked_gvcf = ReblockAndCopy.output_gvcf
File reblocked_gvcf_index = ReblockAndCopy.output_gvcf_index
String reblocked_gvcf = ReblockAndCopy.output_gvcf
String reblocked_gvcf_index = ReblockAndCopy.output_gvcf_index
}
}

Expand Down Expand Up @@ -110,7 +110,7 @@ task ReblockAndCopy {
}

output {
File output_gvcf = output_gvcf_filename
File output_gvcf_index = output_gvcf_filename + ".tbi"
String output_gvcf = destination + output_gvcf_filename
String output_gvcf_index = destination + output_gvcf_filename + ".tbi"
}
}