Removed undocumented mid-p correction to p-values in exact test of Hardy-Weinberg equilibrium and updated corresponding tests.#7394

Merged

samuelklee merged 6 commits intomasterfrom sl_excess_het_calc

Nov 19, 2021

+6,489-6,399

Commits on Nov 15, 2021

Removed undocumented mid-p correction to p-values in exact test of Hardy-Weinberg equilibrium and updated corresponding unit tests.
samuelklee
committed
Updated expected ExcessHet values in integration test resources and added an update toggle to GnarlyGenotyperIntegrationTest. (Then reverted changes to some test resources in a rebase.)
samuelklee
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Re-updated resources for GenotypeGVCFsIntegrationTest and CombineGVCFsIntegrationTest to resolve rebase conflicts; uncommented tests and updated resources for GnarlyGenotyperIntegrationTest.
samuelklee
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Updated GATK version in ExcessHet documentation.
samuelklee
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Updated resources for HaplotypeCallerIntegration test to resolve rebase conflicts.
samuelklee
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Re-updated GATK version in ExcessHet documentation and reverted removal of code in ReducibleAnnotation stubs.
samuelklee
committed