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#259 Inline schema for importgenomes.wdl #7171

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merged 7 commits into from
Mar 30, 2021
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schaluva
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just something to simplify a bit

File metadata_schema
String? pet_schema
String? vet_schema
String? metadata_schema
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I believe you can just do this with

String? metadata_schema = "sample_name:STRING,sample_id:INTEGER,interval_list_blob:STRING,inferred_state:STRING"

it's a little more straightforward, less variables/code... but please verify it works :D should also work for the other schemas

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you also then wouldn't need to change all the "metadata_schema" to "metadata_inline_schema" below

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gatk-bot commented Mar 30, 2021

Travis reported job failures from build 33404
Failures in the following jobs:

Test Type JDK Job ID Logs
cloud openjdk8 33404.1 logs
cloud openjdk11 33404.14 logs

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gatk-bot commented Mar 30, 2021

Travis reported job failures from build 33402
Failures in the following jobs:

Test Type JDK Job ID Logs
cloud openjdk8 33402.1 logs
cloud openjdk11 33402.14 logs

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gatk-bot commented Mar 30, 2021

Travis reported job failures from build 33408
Failures in the following jobs:

Test Type JDK Job ID Logs
cloud openjdk8 33408.1 logs
cloud openjdk11 33408.14 logs

@schaluva schaluva merged commit 98a024d into ah_var_store Mar 30, 2021
@schaluva schaluva deleted the inline_schema branch March 30, 2021 21:35
mmorgantaylor pushed a commit that referenced this pull request Apr 6, 2021
* inline schemas

* inline schema testing

* remove new lines in strings for schema def

* formatting of if else values

* replace dockstore yml to original

* reorganize where default values are to workflow input block
This was referenced Mar 17, 2023
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3 participants