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Updating extract wdls to apply filtering #6977

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Nov 24, 2020
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meganshand
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I added the scatter so we could easily scatter by more than 24 ways, but we still need to change how we are partitioning the filtering/PET/VET tables to line up with our scattered intervals.

Scattering 50 ways, each shard took about 10-15 min extracting 100 WGS samples.

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Travis reported job failures from build 32249
Failures in the following jobs:

Test Type JDK Job ID Logs
conda openjdk8 32249.5 logs

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Thanks!

@meganshand meganshand merged commit e97261f into ah_var_store Nov 24, 2020
@meganshand meganshand deleted the ms_export_wdl branch November 24, 2020 14:51
kcibul pushed a commit that referenced this pull request Feb 1, 2021
kcibul pushed a commit that referenced this pull request Mar 9, 2021
This was referenced Mar 17, 2023
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3 participants