Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix to Allele Fraction annotation bug #6251

Merged
merged 2 commits into from
Nov 21, 2019
Merged

Conversation

kachulis
Copy link
Contributor

@kachulis kachulis commented Nov 6, 2019

Fixes bug in AlleleFraction annotator when run on multisample vcf. In this situation, the AFs calculated for the final (right-most) sample in the vcf are used for all samples, instead of correctly putting the AFs associated with each sample in that sample's genotype annotations.

Bug came from user on forum: https://gatkforums.broadinstitute.org/gatk/discussion/24579/plz-check-my-result-from-variantannotator/p1

Copy link
Contributor

@ldgauthier ldgauthier left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Wonderful, thanks!

@kachulis kachulis merged commit dd6e3a8 into master Nov 21, 2019
@kachulis kachulis deleted the ck_AlleleFraction_annotator branch November 21, 2019 21:00
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants