Updated documentation with FAQ section to respond to user comments. #5755
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LeeTL1220
approved these changes
Mar 5, 2019
| ## 3 - FAQ | ||
| ### Why do I not get annotations from my favorite data source on my favorite variant? | ||
| This almost always happens when the data source does not overlap the variant. Commonly a variant that is not within a gene will not be annotated by data sources because they are not in the region that the data sources cover (e.g. when the `VariantClassification` is `IGR`, `FIVE_PRIME_FLANK`, `COULD_NOT_DETERMINE`, etc.). | ||
| This can also happen if the given reference file does not match the data sources' reference (for the pre-packaged data sources either `hg19`/`b37` or `hg38`). In this case, Funcotator will produce a large obnoxious warning: |
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Quick update to docs to include an FAQ section with the first common question populated.
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