Update example code to correspond to Barclay arg tagging change

[ldgauthier]

No description provided.

[codecov-io]

Codecov Report

Merging #5710 into master will decrease coverage by 0.727%.
The diff coverage is n/a.

@@               Coverage Diff               @@
##              master     #5710       +/-   ##
===============================================
- Coverage     87.072%   86.344%   -0.727%     
- Complexity     31876     32148      +272     
===============================================
  Files           1940      1940               
  Lines         146738    148858     +2120     
  Branches       16226     16713      +487     
===============================================
+ Hits          127767    128530      +763     
- Misses         13058     14348     +1290     
- Partials        5913      5980       +67

Impacted Files	Coverage Δ	Complexity Δ
...bender/tools/walkers/vqsr/VariantRecalibrator.java	60.57% <ø> (ø)	65 <0> (ø)	⬇️
...ls/walkers/mutect/CreateSomaticPanelOfNormals.java	61% <0%> (-32.846%)	21% <0%> (ø)
...rs/variantutils/SelectVariantsIntegrationTest.java	67.993% <0%> (-32.007%)	19% <0%> (-52%)
...aplotypecaller/HaplotypeCallerIntegrationTest.java	57.339% <0%> (-30.767%)	89% <0%> (+4%)
...utils/smithwaterman/SmithWatermanIntelAligner.java	50% <0%> (-30%)	1% <0%> (-2%)
...utils/variant/GATKVariantContextUtilsUnitTest.java	61.598% <0%> (-24.25%)	160% <0%> (ø)
...walkers/validation/ConcordanceIntegrationTest.java	79.444% <0%> (-20.556%)	3% <0%> (-3%)
...kers/vqsr/VariantGaussianMixtureModelUnitTest.java	62.857% <0%> (-20.162%)	13% <0%> (ø)
.../walkers/vqsr/TruthSensitivityTrancheUnitTest.java	66.667% <0%> (-19.048%)	12% <0%> (ø)
...stitute/hellbender/utils/nio/PathLineIterator.java	55.556% <0%> (-8.73%)	6% <0%> (+2%)
... and 16 more

[droazen]

@cmnbroad Perhaps you could review this one?

[cmnbroad]

Thanks for catching those @ldgauthier. Changes look good to merge once we get the tests to pass. I restarted the two failed test jobs since they looked transient.

[ldgauthier]

Thanks, Chris!

…

On Thu, Feb 28, 2019, 8:09 PM Chris Norman ***@***.***> wrote: Merged #5710 <#5710> into master. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#5710 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AGRhdCxTMMfDpv6zWCeugOCOLQgEOc7Zks5vSH3CgaJpZM4bKMiU> .