Code

Port of RevertSam tool into Spark#5395

Code

Merged

jamesemery merged 16 commits intomasterbroadinstitute/gatk:masterfrom je_portRevertSambroadinstitute/gatk:je_portRevertSamCopy head branch name to clipboardJan 4, 2019

+1,635-95

Commits

Commits on Jan 2, 2019

• Added RevertSamSpark, a replacement for the RevertSam tool that allows for removal of alignment information and reversion to the original base qualities for

  Show description for 6f98aa4
  jamesemery

  committed
  6f98aa4

• responding to the first round of comments

  jamesemery

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  1fd3898

• responding to another round of comments with nothing more than rowdy backtalk and refusal to respond

  jamesemery

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  e732739

• fixing a warning

  jamesemery

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  2b696b7

• responding to final round of comments

  jamesemery

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  2e48600

• fixing the compiler warnings

  jamesemery

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  a8d8338

Commits on Jan 3, 2019

• cleaning up a mistaken change

  jamesemery

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  bd0c6f5

• silly !, save it for snake

  jamesemery

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  2b78ecd

• solving the worlds problems

  

  emeryj

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• getting rid of that grossness

  jamesemery

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  de998df

• readding the files i deleted by mistake

  

  emeryj

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  0c00b23

• moving files because directories are hard

  

  emeryj

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• responded to yet another round of comments, when, pray tell, will this chirade end?

  jamesemery

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• Merge branch 'je_portRevertSam' of github.com:broadinstitute/gatk into je_portRevertSam

  

  emeryj

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  3c64144

• fixed a spurious override

  jamesemery

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  f5b7062

Commits on Jan 4, 2019

• No, that really did want to check for emptieness

  jamesemery

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  2730a47