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can eliminate custom google-cloud-bigquery build?
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mcovarr committed Nov 4, 2022
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10 changes: 0 additions & 10 deletions scripts/variantstore/wdl/extract/build_base.Dockerfile
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Expand Up @@ -61,16 +61,6 @@ RUN cd $ARROW_SRC_DIR/python && \
--bundle-arrow-cpp bdist_wheel && \
pip3 install --user /apache-arrow-$ARROW_VERSION/python/dist/pyarrow-$ARROW_VERSION-*.whl

# The following block builds from the head of google-cloud-bigquery and is required until released versions allow
# PyArrow >= 10.0.0 (that change was only merged 2022-11-02).
RUN pip3 install build
RUN mkdir /gitrepos && \
cd /gitrepos && \
git clone https://github.com/googleapis/python-bigquery.git && \
cd python-bigquery && \
python3 -m build --wheel && \
pip3 install --user $(find . -name '*.whl')

# Straightforward bcftools build following these instructions:
# https://github.com/samtools/bcftools/blob/develop/INSTALL
ARG BCFTOOLS_VERSION=1.16
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