Added JointCallExomeCNVs to dockstore.yml and included note in the WF (…

…#7719)
broadinstitute · Mar 14, 2022 · f171428 · f171428
1 parent b14f810
commit f171428
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diff --git a/.dockstore.yml b/.dockstore.yml
@@ -32,6 +32,12 @@ workflows:
      filters:
          branches:
              - master
+   - name: cnv_joint_call_exomes
+     subclass: WDL
+     primaryDescriptorPath: /scripts/cnv_wdl/germline/joint_call_exome_cnvs.wdl
+     filters:
+         branches:
+             - master
    - name: cram2filtered
      subclass: WDL
      primaryDescriptorPath: /scripts/cnn_variant_wdl/cram2filtered.wdl

diff --git a/scripts/cnv_wdl/germline/joint_call_exome_cnvs.wdl b/scripts/cnv_wdl/germline/joint_call_exome_cnvs.wdl
@@ -5,6 +5,8 @@ import "https://raw.githubusercontent.com/broadinstitute/gatk-sv/v0.10-beta/wdl/
 
 workflow JointCallExomeCNVs {
 
+    # NOTE: We don’t recommend using this for more than ~300 samples.
+
     ##################################
     #### required basic arguments ####
     ##################################