Create VAT scripts directory (#7386)

* just an initial note on the VAT---more documentation needed * create vat scripts dir and move in template
broadinstitute · Aug 2, 2021 · 98143c5 · 98143c5
1 parent b24f091
commit 98143c5
Show file tree

Hide file tree

Showing 2 changed files with 8 additions and 0 deletions.
diff --git a/scripts/variantstore/README.md b/scripts/variantstore/README.md
@@ -14,3 +14,11 @@ After using the json file to auth as that service account, you can query the
 
     # use a query like this to get the total number of bytes billed
     bq --project_id <project> query --use_legacy_sql=false 'select sum(total_bytes_billed) as total from `region-us`.INFORMATION_SCHEMA.JOBS_BY_USER where creation_time > "2021-04-16 00:00:00" and creation_time < "2021-04-18 00:00:00" and total_bytes_billed > 1 limit 100'
+
+
+### Running the VAT pipeline
+The VAT pipeline is a set of WDLs
+GvsSitesOnlyVCF.wdl
+GvsValidateVAT.wdl
+
+The pipeline takes in a jointVCF and outputs a table in BigQuery
diff --git a/custom_annotations_template.tsv → ...ons_table/custom_annotations_template.tsv b/custom_annotations_template.tsv → ...ons_table/custom_annotations_template.tsv