indices and sample it is.

broadinstitute · May 12, 2022 · 96b1120 · 96b1120
1 parent 3b99e52
commit 96b1120
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/scripts/variantstore/InputValidation.ipynb b/scripts/variantstore/InputValidation.ipynb
@@ -62,10 +62,10 @@
     "            field_name = list(field_names_found)[0]\n",
     "        else:\n",
     "            error_seen = True\n",
-    "            print(f\"ERROR: There are multiple columns in the 'samples' datatable {str(field_names_found)} that potentially contain reblocked gvcfs\")\n",
+    "            print(f\"ERROR: There are multiple columns in the 'sample' datatable {str(field_names_found)} that potentially contain reblocked gvcfs\")\n",
     "    else:\n",
     "        error_seen = True\n",
-    "        print(f\"ERROR: No column for {type_string} in the 'samples' datatable\")\n",
+    "        print(f\"ERROR: No column for {type_string} in the 'sample' datatable\")\n",
     "    return field_name, error_seen\n"
    ]
   },
@@ -124,7 +124,7 @@
     "\n",
     "errors_seen = False\n",
     "\n",
-    "# This is a list of all of the *possible* field names for reblocked gvcfs and their corresponding indexes\n",
+    "# This is a list of all of the *possible* field names for reblocked gvcfs and their corresponding indices\n",
     "reblocked_gvcf_fields = ['reblocked_gvcf', \n",
     "                         'reblocked_gvcf_path',\n",
     "                         'hg38_reblocked_gvcf']\n",
@@ -227,8 +227,8 @@
     "else:\n",
     "    print(\"Successfully Validated GVS Inputs\")\n",
     "    print(\"Validated that all samples have non-empty, and unique names\")\n",
-    "    print(\"Validated that reblocked gvcfs and indexes were found in the data model\")\n",
-    "    print(\"Validated that all samples' reblocked gvcfs have corresponding indexes\\n\")\n",
+    "    print(\"Validated that reblocked gvcfs and indices were found in the data model\")\n",
+    "    print(\"Validated that all samples' reblocked gvcfs have corresponding indices\\n\")\n",
     "\n",
     "    print(f\"FYI: The name of the column in the datamodel that contains the reblocked gvcfs is: {gvcf_field}\")\n",
     "    print(f\"FYI: The name of the column in the datamodel that contains the reblocked gvcf indices is: {gvcf_index_field}\")\n",