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Co-authored-by: Bec Asch <[email protected]>
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mcovarr and rsasch authored Jan 25, 2023
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Expand Up @@ -50,12 +50,12 @@ Once those inputs have been created, they can be used by the GvsCreateVATfromVDS
### Using the Nirvana reference image in Terra (AoU Echo and later callsets)

The Variants team created a Cromwell reference image containing all reference files used by Nirvana 3.18.1. This is
useful to avoid having to download tens of GiBs of Nirvana references in each shard of the scattered `AnnotateVCF`.
useful to avoid having to download tens of GiBs of Nirvana references in each shard of the scattered `AnnotateVCF` task.
In order to use this reference disk, the 'Use reference disk' option in Terra must be selected as shown below:

![Terra Use reference disks](Reference%20Disk%20Terra%20Opt%20In.png)

Note: this Nirvana reference image was not available in time for it to be used to create the Delta VAT. The
**Note:** this Nirvana reference image was not available in time for it to be used to create the Delta VAT. The
`GvsCreateVATfromVDS` WDL has been speculatively updated to take advantage of references loaded from an attached
reference image but has not actually been run to create a VAT.

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