Complex SV intervals support #4430

Job	Run time
build and push gatk docker to artifacts	16m 47s
build and push gatk docker to artifacts	16m 47s
Validate script WDLs using womtools	1m 10s
Validate script WDLs using womtools	1m 10s
check if the environment has privileges	1s
check if the environment has privileges	1s
Validate generated WDLs using womtools	13m 52s
Validate generated WDLs using womtools	13m 52s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	24m 19s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	24m 19s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	26m 0s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	26m 0s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	1m 46s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	24m 7s
WDL test RUN_M2_WDL on cromwell	16m 32s
WDL test RUN_M2_WDL on cromwell	16m 32s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	13m 8s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	13m 8s
Java 17.0.6+10 build and test cloud	24m 0s
Java 17.0.6+10 build and test cloud	24m 0s
Java 17.0.6+10 build and test integration	32m 25s
Java 17.0.6+10 build and test integration	32m 25s
Java 17.0.6+10 build and test unit	20m 45s
Java 17.0.6+10 build and test unit	20m 45s
Java 17.0.6+10 test on docker integration	37m 3s
Java 17.0.6+10 test on docker integration	37m 3s
Java 17.0.6+10 test on docker unit	22m 49s
Java 17.0.6+10 test on docker unit	22m 49s
Java 17.0.6+10 test on docker variantcalling	32m 11s
Java 17.0.6+10 test on docker variantcalling	32m 11s
Java 17.0.6+10 test on docker conda	25m 24s
Java 17.0.6+10 test on docker conda	25m 24s
	10h 38m 45s

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