Inverted SoftClippedReadFilter to conform to filtering logic #4397

Job	Run time
Validate script WDLs using womtools	54s
Validate generated WDLs using womtools	13m 32s
build and push gatk docker to artifacts	21m 46s
check if the environment has privileges	1s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	28m 55s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	31m 18s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	24m 37s
WDL test RUN_M2_WDL on cromwell	17m 34s
WDL test RUN_CNN_WDL on cromwell	15m 41s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	13m 1s
Java 17.0.6+10 build and test cloud	14m 47s
Java 17.0.6+10 build and test integration	32m 35s
Java 17.0.6+10 build and test unit	21m 27s
Java 17.0.6+10 test on docker integration	36m 52s
Java 17.0.6+10 test on docker unit	22m 50s
Java 17.0.6+10 test on docker variantcalling	32m 17s
Java 17.0.6+10 test on docker conda	31m 52s
	5h 59m 59s

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