Add malaria spanning deletion exception regression test with fix #4102

Job	Run time
build and push gatk docker to artifacts	22m 41s
Validate script WDLs using womtools	54s
check if the environment has privileges	1s
Validate generated WDLs using womtools	13m 21s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	29m 19s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	29m 34s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	26m 16s
WDL test RUN_M2_WDL on cromwell	17m 45s
WDL test RUN_CNN_WDL on cromwell	16m 55s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	13m 38s
Java 17.0.6+10 build and test cloud	24m 48s
Java 17.0.6+10 build and test integration	32m 59s
Java 17.0.6+10 build and test unit	21m 1s
Java 17.0.6+10 test on docker integration	38m 24s
Java 17.0.6+10 test on docker unit	24m 13s
Java 17.0.6+10 test on docker variantcalling	32m 59s
Java 17.0.6+10 test on docker conda	33m 8s
	6h 17m 56s

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