gatk GenotypeGVCFs USER ERROR: The list of input alleles must contain <NON_REF> as an allele but that is not the case #4484
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| name: carrot-test-run-from-pr-comment | |
| on: | |
| issue_comment: | |
| types: [created] | |
| jobs: | |
| publish-test: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Parse comment | |
| uses: broadinstitute/[email protected] | |
| with: | |
| software-name: gatk | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| topic-name: ${{ secrets.CARROT_TOPIC_NAME }} | |
| sa-key: ${{ secrets.CARROT_SA_KEY }} | |
| minimum-permissions: write |