Extract Cohort optimizations [VS-493] [VS-1516] #4935

Job	Run time
build and push gatk docker to artifacts	1h 56m 17s
check if the environment has privileges	1s
Validate generated WDLs using womtools	13m 47s
Validate script WDLs using womtools	54s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	1h 54m 11s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	1h 33m 55s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	1h 58m 3s
WDL test RUN_M2_WDL on cromwell	1h 37m 24s
WDL test RUN_CNN_WDL on cromwell	1h 30m 39s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	1h 35m 38s
Java 17.0.6+10 build and test cloud	25m 15s
Java 17.0.6+10 build and test integration	32m 57s
Java 17.0.6+10 build and test unit	20m 22s
Java 17.0.6+10 test on docker integration	38m 15s
Java 17.0.6+10 test on docker unit	22m 47s
Java 17.0.6+10 test on docker variantcalling	33m 55s
Java 17.0.6+10 test on docker conda	30m 8s
	15h 44m 28s

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