VS-1490 - Refactor python code from extract dir into a scripts directory. #4880

Job	Run time
Validate generated WDLs using womtools	13m 22s
build and push gatk docker to artifacts	2h 20m 27s
Validate script WDLs using womtools	57s
check if the environment has privileges	1s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	1m 39s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	1m 38s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	1m 54s
WDL test RUN_M2_WDL on cromwell	1m 42s
WDL test RUN_CNN_WDL on cromwell	1m 42s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	1m 38s
Java 17.0.6+10 build and test cloud	15m 35s
Java 17.0.6+10 build and test integration	33m 14s
Java 17.0.6+10 build and test unit	21m 5s
Java 17.0.6+10 test on docker integration	38m 24s
Java 17.0.6+10 test on docker unit	23m 59s
Java 17.0.6+10 test on docker variantcalling	33m 24s
Java 17.0.6+10 test on docker conda	30m 30s
	6h 1m 11s

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