The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth

Java 17.0.6+10 build and test cloud

The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/setup-gcloud

Java 17.0.6+10 build and test unit

Java 17.0.6+10 build and test integration

Java 17.0.6+10 test on docker unit

WDL test RUN_CNN_WDL on cromwell

Process completed with exit code 1.

Java 17.0.6+10 test on docker conda

Java 17.0.6+10 test on docker variantcalling

Java 17.0.6+10 test on docker integration

Validate script WDLs using womtools

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-java@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Validate generated WDLs using womtools

Java 17.0.6+10 build and test cloud

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-java@v3, google-github-actions/auth@v0, google-github-actions/setup-gcloud@v0, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Java 17.0.6+10 build and test unit

Java 17.0.6+10 build and test integration

build and push gatk docker to artifacts

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, docker/metadata-action@v4, docker/setup-buildx-action@v2, docker/build-push-action@v4, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_M2_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

Java 17.0.6+10 test on docker unit

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-java@v3, google-github-actions/auth@v0, google-github-actions/setup-gcloud@v0, actions/download-artifact@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

WDL test RUN_CNN_WDL on cromwell

Java 17.0.6+10 test on docker conda

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-java@v3, google-github-actions/auth@v0, google-github-actions/setup-gcloud@v0, actions/download-artifact@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

WDL test RUN_CNV_SOMATIC_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

Java 17.0.6+10 test on docker variantcalling

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-java@v3, google-github-actions/auth@v0, google-github-actions/setup-gcloud@v0, actions/download-artifact@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

Java 17.0.6+10 test on docker integration

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-java@v3, google-github-actions/auth@v0, google-github-actions/setup-gcloud@v0, actions/download-artifact@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Deprecation notice: v1, v2, and v3 of the artifact actions

The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "gatkDockerImage", "test-results-17.0.6+10-cloud", "test-results-17.0.6+10-integration", "test-results-17.0.6+10-unit", "test-results-docker-17.0.6+10-conda", "test-results-docker-17.0.6+10-integration", "test-results-docker-17.0.6+10-unit", "test-results-docker-17.0.6+10-variantcalling". Please update your workflow to use v4 of the artifact actions. Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/

Artifacts

Produced during runtime

Name	Size
gatkDockerImage	2.25 GB
test-results-17.0.6+10-cloud	333 KB
test-results-17.0.6+10-integration	3.46 MB
test-results-17.0.6+10-unit	157 MB
test-results-docker-17.0.6+10-conda	282 KB
test-results-docker-17.0.6+10-integration	3.38 MB
test-results-docker-17.0.6+10-unit	155 MB
test-results-docker-17.0.6+10-variantcalling	235 KB

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RW-11727 pass query_project instead #4859

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RW-11727 pass query_project instead #4859

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gatk-tests.yml

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