Added a '--prefer-mane-transcripts' mode that enforces MANE_Select tagged Gencode transcripts where possible #4789

Job	Run time
build and push gatk docker to artifacts	16m 22s
Validate generated WDLs using womtools	13m 42s
Validate script WDLs using womtools	48s
check if the environment has privileges	1s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	26m 3s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	26m 27s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	24m 30s
WDL test RUN_M2_WDL on cromwell	16m 17s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	12m 18s
Java 17.0.6+10 build and test cloud	18m 31s
Java 17.0.6+10 build and test integration	32m 11s
Java 17.0.6+10 build and test unit	18m 1s
Java 17.0.6+10 test on docker integration	37m 46s
Java 17.0.6+10 test on docker unit	21m 15s
Java 17.0.6+10 test on docker variantcalling	28m 22s
Java 17.0.6+10 test on docker conda	26m 30s
	5h 19m 4s

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