VS-1476. Removing All usage of VQSR from VDS creation. #4782

Job	Run time
Validate generated WDLs using womtools	13m 43s
build and push gatk docker to artifacts	36m 52s
check if the environment has privileges	1s
Validate script WDLs using womtools	3m 43s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	42m 18s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	40m 28s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	42m 0s
WDL test RUN_M2_WDL on cromwell	36m 44s
WDL test RUN_CNN_WDL on cromwell	33m 24s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	30m 3s
Java 17.0.6+10 build and test cloud	17m 23s
Java 17.0.6+10 build and test integration	33m 45s
Java 17.0.6+10 build and test unit	20m 57s
Java 17.0.6+10 test on docker integration	38m 50s
Java 17.0.6+10 test on docker unit	22m 44s
Java 17.0.6+10 test on docker variantcalling	33m 30s
Java 17.0.6+10 test on docker conda	29m 57s
	7h 56m 22s

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