Require both overlap and breakend proximity for depth-only SV clustering #4637

Job	Run time
Validate script WDLs using womtools	58s
Validate script WDLs using womtools	58s
check if the environment has privileges	1s
check if the environment has privileges	1s
build and push gatk docker to artifacts	16m 59s
build and push gatk docker to artifacts	16m 59s
Validate generated WDLs using womtools	14m 6s
Validate generated WDLs using womtools	14m 6s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	24m 14s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	24m 14s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	26m 58s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	26m 58s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	24m 26s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	24m 26s
WDL test RUN_M2_WDL on cromwell	17m 8s
WDL test RUN_M2_WDL on cromwell	17m 8s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	12m 51s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	12m 51s
Java 17.0.6+10 build and test cloud	17m 38s
Java 17.0.6+10 build and test cloud	17m 38s
Java 17.0.6+10 build and test integration	33m 27s
Java 17.0.6+10 build and test integration	33m 27s
Java 17.0.6+10 build and test unit	21m 34s
Java 17.0.6+10 build and test unit	21m 34s
Java 17.0.6+10 test on docker integration	41m 29s
Java 17.0.6+10 test on docker integration	41m 29s
Java 17.0.6+10 test on docker unit	1m 36s
Java 17.0.6+10 test on docker unit	22m 56s
Java 17.0.6+10 test on docker variantcalling	32m 44s
Java 17.0.6+10 test on docker variantcalling	32m 44s
Java 17.0.6+10 test on docker conda	25m 52s
Java 17.0.6+10 test on docker conda	25m 52s
	10h 45m 22s

Provide feedback