Check for empty scatter in GenotypeDepthPart2 (#607) #230
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test WDLs | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - 'wdl/**' | |
| pull_request: | |
| branches: | |
| - main | |
| paths: | |
| - 'wdl/**' | |
| jobs: | |
| syntax_test_job: | |
| runs-on: ubuntu-22.04 | |
| name: Check WDL Syntax | |
| strategy: | |
| matrix: | |
| python-version: ['3.8'] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Setup Java | |
| uses: actions/setup-java@v3 | |
| with: | |
| # See https://github.com/actions/setup-java for the available options. | |
| distribution: 'temurin' | |
| java-version: '17' | |
| - name: Setup | |
| run: | | |
| python -m pip install --upgrade pip | |
| # Setup for running miniwdl | |
| pip install miniwdl | |
| # Setup for running womtool | |
| pip install jinja2==3.1.2 | |
| wget -O womtool.jar https://github.com/broadinstitute/cromwell/releases/download/84/womtool-84.jar | |
| echo \ | |
| '{ "google_project_id": "my-google-project-id", "terra_billing_project_id": "my-terra-billing-project" }' \ | |
| > inputs/values/google_cloud.my_project.json | |
| scripts/inputs/build_default_inputs.sh -d . -c google_cloud.my_project | |
| - name: Test with Miniwdl | |
| run: | | |
| python scripts/test/miniwdl_validation.py \ | |
| --imports-dir wdl \ | |
| wdl/*.wdl | |
| - name: Test with WOMtool | |
| run: | | |
| scripts/test/validate.sh -t -d . -j womtool.jar |