Use standard pre-commit config

[dstansby]

This applies the standard pre-commit-config.yaml file from https://github.com/SainsburyWellcomeCentre/python-cookiecutter, and fixes files as needed for this new config.

[codecov]

Codecov Report

Base: 99.13% // Head: 99.13% // No change to project coverage 👍

Coverage data is based on head (8bd3911) compared to base (0bc0d6a).
Patch coverage: 100.00% of modified lines in pull request are covered.

Additional details and impacted files

@@           Coverage Diff           @@
##             main      #77   +/-   ##
=======================================
  Coverage   99.13%   99.13%           
=======================================
  Files           9        9           
  Lines         231      231           
=======================================
  Hits          229      229           
  Misses          2        2           

Impacted Files	Coverage Δ
tests/tests/test_integration/test_detection.py	100.00% <ø> (ø)
tests/tests/test_unit/test_tools/test_geometry.py	100.00% <100.00%> (ø)

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